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19 protocols using coomassie brilliant blue r 250

1

Silkworm Cocoon Protein Extraction

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Extraction of proteins from the cocoons of each transgenic silkworm strain was performed as previously described41 (link). Briefly, 1 undegummed cocoon was selected randomly and cut into pieces, grinding with liquid nitrogen until to powder. 20-mg cocoon samples were suspended in 400 μl of SDS-protein extraction solution for 3 h at room temperature. Subsequently, the protein-containing supernatant of each sample was collected by centrifugation at 15,000 rpm for 10 min at 4 °C and diluted with protein loading buffer for further assays. The cocoon protein samples were loaded at equal volume into 4–15% gradient SDS-PAGE gels (Sangon, Shanghai). Proteins were visualized by staining with Coomassie brilliant blue R-250 (Sangon). Proteins extracted from the cocoons were transferred onto a PVDF membrane (Immobilon-P, Millipore) after separation by SDS-PAGE. The membrane was blocked with 3% BSA in TBS-T (10 mM Tris, 150 mM NaCl, and 0.1% Tween 20) and was then incubated with an anti-His antibody (1:5000 dilution, Sangon) as the primary antibody and peroxidase conjugate goat anti-rabbit IgG-HRP (1:5000 dilution, Sangon) as the secondary antibody. Signal detection was performed using a high-sensitivity ECL luminescence reagent kit (Sangon, Shanghai).
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2

Trichoderma Secretome Proteomic Analysis

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After 7 days’ culture with wheat bran and Avicel medium, the supernatant of RUT-C30, Δsxlr, Osxlr, and Rsxlr strain was collected. The samples were loaded into 12.5% PAGE gel, 70 min at 120 V were preferred for proteins separation. Coomassie brilliant blue R250 (Sangon, Shanghai, China) was used to color the gel for 1 h. Destainer (distilled water: ethanol: acetic acid, 5:4:1, v/v) was added for another 2–4 h. Finally, the protein band was excised from the gel and send to Shanghai Applied Protein Technology Co. Ltd, protein analysis was conducted with a MALDI-TOF/TOF mass spectrometer 5800 Proteomics Analyzer (Applied Biosystems, Framingham, MA, USA), NCBI Trichoderma (59929 protein sequence) was selected as database.
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3

Polyacrylamide Gel Electrophoresis Protein Analysis

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The mixture of culture supernatants and 5 × loading buffers were boiled for 10 min and loaded onto a 12.5% polyacrylamide gel. Coomassie brilliant blue R250 (Sangon, Shanghai, China) was used for staining. Then, the protein gel was washed by a destaining solvent (methanol, acetic acid, and water, 1:1:8, v/v/v) until the background turned clear.
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4

Standardized Skin Cell Culture Protocol

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C57BL/6, ICR mice, and SD rats were purchased from Shanghai Jieshige Laboratory Animal Co., Ltd. (Shanghai, China) and housed under specific pathogen-free (SPF) conditions; they had free access to food and water and were under a 12 h light and dark cycle. All experiments involving animals were performed in accordance with the guidelines of the Institutional Animal Care and Use Committee (IACUC) and were approved by the Ethics Committee of Shanghai University.
Coomassie brilliant blue R250 (0.025 g, A610037, Sangon Biotech, Shanghai, China) was dissolved in 4.5 mL of methanol and 1 mL of glacial acetic acid and added to 4.5 mL of H2O. Minoxidil (50 mg, M831481, Macklin, Shanghai, China) was dissolved in 1 mL of glycerol and 1 mL of 75% ethanol and then diluted to the appropriate concentration with 0.9% saline. Ruxolitinib (R849099, Macklin, Shanghai, China) was dissolved in DMSO and then diluted with 20% cyclodextrin. D-arbutin (ID0490, Solarbio, Beijing, China) was dissolved in DMSO and then diluted with 0.9% saline. RSPO1 (50316-M08S) and NBL1 (50976-M08H) proteins were purchased from Sino Biological (Beijing, China). The HaCaT cell line was introduced from the Cell Bank of the Chinese Academy of Sciences (SCSP-5091).
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5

Protein Extraction and Quantification

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Acrylamide, N,N-methylene bisacrylamide, glycine and tris base were purchased from Jintai Hongda Biotechnology Co., Ltd. (Beijing, China). 2-Thiobarbituric acid, dithiothreitol, thiourea, Coomassie Brilliant Blue R-250, sodium dodecyl sulphate (SDS), bromophenol blue and 2,4-dinitrophenylhydrazine were obtained from Sangon Biotech Co., Ltd. (Shanghai, China). N,N,N,N-tetramethylethylenediamine and β-mercaptoethanol were acquired from Macleans Biochemical Technology Co., Ltd. (Shanghai, China). Coomassie Brilliant Blue kit was provided by Nanjing Jiancheng Institute of Bioengineering (Jiangsu, China). 1,1,3,3-Tetraethoxypropane and chromatography grade formic acid were supplied by Sigma-Aldrich Co., Ltd. (MO, USA). Mass spectrometry-grade trypsin, acetonitrile and water were obtained from Thermo Fisher Scientific (MA, USA). All other chemical reagents were of analytical grade and purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
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6

Amylase Activity Determination Protocol

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Amylase activity was assayed according to the DNS method. The amounts of released reducing sugars were determined using the dinitrosalicylic acid method [26 (link)]. The absorbance of the reaction system was measured at 540 nm. Up to 1.5 mL of starch solution was added for amylase activity assays, and the reaction was incubated at 40 °C for 10 min. One unit of enzymatic activity (U) was defined as the amount of enzyme needed to release 1 μmol of glucose equivalent per minute. Protein concentration was measured by using a Bradford reagent kit (Sangon Biotech, China). SDS-PAGE was performed using 12% polyacrylamide to determine protein purity. The protein profile was analyzed by staining gels with Coomassie Brilliant Blue R-250 (Sangon Biotech, China) destaining gels with 10% (w/v) acetate solution.
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7

Protein Separation by SDS-PAGE

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Up to 12.5% gel was prepared for protein separation. The mixture of 15 μL culture supernatant and 3 μL 5× loading buffer was placed in boiling water for 10 min and was loaded into the gel. Coomassie brilliant blue R250 (Sangon, Shanghai, China) was used to color the gel for 30 min. Destainer (glacial acetic acid:ethanol:distilled water, 1:1:8,v/v/v) was used to destain the gel for another 2–4 h.
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8

Extraction and Characterization of Cashew Nut Proteins

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Shelled raw cashew nut (Anacardium occidentale L.) was purchased from the local HongCheng Market in Nanchang (Nanchang, Jiangxi, China) and stored at −4 °C until use. Gel electrophoresis reagent, molecular weight protein markers (14.4–116.0 kDa) and Folin-phenol reagent were purchased from Solarbio Science & Technology Co., Ltd. (Beijing, China). Sodium dodecyl sulfate (SDS), bovine serum albumin (BSA), and Coomassie Brilliant Blue R-250 were supplied by Sangon Biotech Co., Ltd. (Shanghai, China). All other chemicals and reagents used were of analytical grade or better.
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9

Recombinant Protein Expression in E. coli

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The expression vector pET28a(+) and E. coli strains BL21 (DE3), were stored at − 80 °C in our lab. Kanamycin, protease inhibitors phenylmethanesulfonyl fluoride (PMSF) and IPTG were purchased from Sangon Biotech (Shanghai, China). p-NPG was purchased from Bio Teke Corporation (Beijing, China). Glycine, Tris, SDS, Bromophenol blue, coomassie brilliant blue R 250 and p-nitrophenol (p-NP) were purchased from San gon Biotech (Shanghai, China). Acrylamide and TEMED were bought from Sigma (USA). Glycerinum, isopropanol, methyl alcohol, β-mercaptoethanol, ammonium persulfate and glacial acetic acid were obtained from Sinopharm Chemical Reagent (Shanghai, China). Thermo Scientific Pierce BCA Protein Assay Kit was purchased from Thermo Fisher Scientific (MA, USA). High Affinity Ni-NTA Resin was bought from Genscript (Nanjing, China). All other reagents were of analytical grade and used without any further treatment.
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10

Starch-Digesting Enzyme Activity Assay

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The raw starch-digesting enzyme activity was measured according to the DNS method [42 (link)]. The absorbance of the reaction system was measured at 540 nm. Up to 1.5 mL of starch solution was added for RSDE activity assays, and the reaction was incubated at 40 °C for 10 min. One unit of enzymatic activity (U) was defined as the amount of enzyme required to produce 1 μmol of reducing sugars per min from the reaction substrate. SDS-PAGE was performed using 12% polyacrylamide to determine protein purity. The protein profile was analysed by staining gels with Coomassie Brilliant Blue R-250 (Sangon Biotech, Shanghai, China) and destaining gels with 10% (w/v) acetate solution.
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