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36 protocols using ab65080

1

Western Blot Analysis of Apoptosis and Ferroptosis Markers

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The western blot assay was carried out as previously described (Zhao et al., 2021 (link)). The primary antibodies against caspase-3 (Abcam, ab65080), cyclin D1 (Abcam, ab226977), CDK4 (Abcam, ab137675), p21 (Abcam, ab227443), FPN (Abcam, ab235166), TF (Abcam, ab84036), FTH1 (Abcam, ab65080), GPX4 (Abcam, ab125066), Nrf2 (Abcam, ab137550), HO-1 (Abcam, ab13243) and β-actin (Abcam, ab8227) were used in this investigation.
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2

Hepatocyte Iron Metabolism Pathway

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Mouse primary hepatocytes cultured with Fe3+ and ICG/Leci were lysed using radioimmunoprecipitation assay lysis buffer, and the total protein was loaded on a 12% SDS–polyacrylamide gel electrophoresis. The samples were then transferred to nitrocellulose membranes. After blocking with 5% bovine serum albumin, the material was incubated overnight with a rabbit anti-human H-ferritin primary antibody at 1:1000 dilution (Abcam, ab65080), rabbit anti-mouse glyceraldehyde-3-phosphate dehydrogenase (GAPDH) at 1:10,000 dilution (ABclonal, AC001), rabbit anti-mouse TfR1 at 1:1000 dilution (Abcam, ab65080), rabbit anti-human ferroportin at 1:1000 dilution (Alpha Diagnostics, MTP11-A), and anti-rabbit immunoglobulin G secondary antibodies at 1:2500 dilution (ABclonal, AS014); the samples were detected with the ECL System (Pierce).
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3

Protein Extraction and Immunoblotting

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Cellular proteins were extracted using radio immunoprecipitation assay (RIPA) lysis buffer, and protease inhibitors were added to the lysate to protect the proteins. Anti-FTH polyclonal antibody (ab65080, Abcam), anti-αS1002/S100A2 (ab109494, Abcam), S100A4 (ab124805, Abcam), and S100P (ab133554, Abcam) monoclonal antibodies were diluted as the first antibody in a 1:1,000 ratio. Anti-mouse IgG H&L horseradish peroxidase (HRP), goat anti-rabbit IgG H&L HRP, and mouse anti-β actin monoclonal antibodies (Beijing Dingguo Chang Sheng Company) were diluted to a 1:2,500 ratio. Primary antibodies and polyvinylidene fluoride (PVDF) membranes were incubated overnight at 4 °C. The next day, the PVDF membranes were washed 3 times in phosphate-buffered saline (PBS) buffer. Then, they were incubated with secondary antibodies, which were labeled with HRP for 1 h. Target protein bands were determined by enhanced chemiluminescence, and β-actin was an internal reference to achieve consistent sample loading per well. Each experiment was repeated 3 times.
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4

Comprehensive Immunohistochemical Analysis of Iron Metabolism and Neuroinflammation

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A polyclonal rabbit anti-hepcidin 25 (Abcam, ab30760), recognising a 2.8 kDa protein [53 (link)], monoclonal antibody (MAB) human anti-ferritin light chain (Abcam, ab69090), human anti-ferritin heavy chain (Abcam, ab65080), anti-DMT1 (Abcam, ab123085), anti-FPN (Abcam, ab85370), anti-CD42b (Abcam, ab104704), anti-rabbit polyclonal glycophorin (Abcam, ab196568), anti-GFAP (Abcam, ab48050), anti-CD68 (Sigma-Aldrich, AMAB98073), MAB anti-CD11b (Thermo Fisher, Waltham, MA, USA, mAbM1/70), GFAP (Abcam, ab48050), MAB anti-Iba1 (Thermo Fisher, MAB M1/70), polyclonal anti-Iba1 (Wako, Fujifilm, Tokyo, Japan, catalogue number 019-19741), MAB anti-IL-6 (Thermo Fisher, catalog number M620), MAB IL-1β (Thermo Fisher, ILB1-H67), MAB anti-β amyloid 42 (Covance, Princeton, NJ, USA, SIG 39320), anti-phospho-tau (AT8, Thermo Fisher, MN1020), SOD1 (Abcam, ab252426), S100β (Abcam, ab218514), RUNX1 (Sigma-Aldrich, HPA004176) and OLIG2 (Santa Cruz Biotechnology, Dallas, TX, USA, sc-365644) were used for IHC or Western blotting. The following secondary antibodies were used: biotinylated goat anti-rabbit-Ig and biotinylated horse anti-mouse (both from Vector Laboratories, 1:250 for IHC), Alexa Fluor 568-labelled donkey anti-mouse-Ig, Alexa Fluor 488-labelled donkey anti-rabbit-Ig and Alexa Fluor 568-labelled donkey anti-goat-Ig (all from Invitrogen, 1:1000 for immunofluoresence).
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5

Immunohistochemical Analysis of Mouse Organs

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Paraffin embedded mice eyes and spleens were sectioned, deparaffinized, and rehydrated. Antigen retrieval was performed in a solution with 3.38% citric acid and 24.4% sodium citrate. Sections were washed in PBI (1x PBS, 0.05% Igepal). The following primary antibodies were used: rabbit anti-mouse L-ferritin (1:100; ab69090 Abcam); rabbit anti-mouse H-ferritin (1:100; ab65080 and ab183781 Abcam); goat anti-mouse collagen IV (1:20; AB769, Merck Millipore); and rabbit anti-mouse albumin (1:2000; A001, DAKO, Glostrup, Denmark). All primary antibodies were diluted in 1x PBS, 0.5% bovine serum albumin, 0.05% Igepal with 10% of donkey serum (Sigma Aldrich), except anti-albumin antibody that was diluted in PBI. Negative controls were included by omitting the primary antibody in sequential tissue sections. Secondary antibodies donkey anti-goat Alexa 488 (1:1000; Life Technology, Carlsbad, Ca, USA) and goat anti-rabbit 568 (1:1000; Invitrogen, Carlsbad, CA, USA) were incubated for 2 hours. Samples were counterstained with Hoechst (Sigma-Aldrich), mounted in Fluoromount (Sigma-Aldrich) and analyzed in a SP5 laser scanning confocal microscope (Leica Microsystems GmbH).
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6

Immunohistochemical Analysis of Neurodegenerative Markers

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A polyclonal rabbit anti-hepcidin 25 (Abcam ab30760) recognising a 2.8 kDa protein (Raha-Chowdhury et al., 2015 (link)), human anti-ferritin light chain (Abcam ab69090), human anti-ferritin heavy chain (Abcam ab65080), Anti-FPN (Abcam ab85370), anti-GFAP (Abcam ab48050), anti-CD68 (Sigma–Aldrich, MAB98073), and monoclonal anti-Iba1 (Thermo Fisher Scientific, MAB M1/70), Polyclonal anti-Iba1(Wako cat number 019-19741), monoclonal anti-IL-6 (Thermo Fisher, cat number M620), monoclonal anti-IL-1β (Thermo Fisher Scientific, cat number ILB1-H67), Anti-β amyloid (Covance cat number SIG 39320), Anti-Phospho-Tau (AT8, Thermo Fisher Scientific, cat number MN1020), was used for IHC. The following secondary antibodies were used: biotinylated goat anti-rabbit-Ig and biotinylated horse anti-mouse (both from Vector Laboratories, 1:250 for IHC); Alexa Fluor 568-labeled donkey anti-mouse-Ig, Alexa Fluor 488-labeled donkey anti-rabbit-Ig, and Alexa Fluor 568-labeled donkey anti-goat-Ig (all from Invitrogen, 1:1,000 for immunofluorescence).
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7

Immunohistochemical Analysis of Iron Metabolism

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Three μm paraffin sections were stained on a Dako Autostainer Universal Staining System (Dako, Glostrup, Denmark). The sections were deparaffinized, and heat induced epitope retrieval (HIER) was performed by incubation in a buffer solution consisting of 10 mmol/L Tris-base and 0.5 mmol/L EGTA, pH 9. After blocking of endogenous peroxidase activity by incubation in 1.5% hydrogen peroxide, the sections were incubated for 60 min with primary antibodies against TfR1 (CD71) (10F11, 1+50, NovoCastra, Newcastle, United Kingdom), FTH (ab65080, 1+800, Abcam, Cambridge, United Kingdom), or FTL (ab69090, 1+1000, Abcam). The antigen-antibody complex was detected using EnVision (Dako). Visualization was performed using DAB (diaminobenzidine) as chromogen. Finally, sections were counterstained with Mayer’s hematoxylin, and coverslips were mounted with Aquatex. Paraffin sections from a TMA containing 28 normal tissues and 12 cancers were used as controls. Omitting primary antibodies served as negative controls as well as controls for non-specific staining related to the detection system.
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8

Ferroptosis Pathway Modulation Assay

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Dihydroartemisinin (DHA, D140839, purity: ≥98%), hemin (H140872) and chloroquine (CQ, C193834) were purchased from Aladdin (China). Dimethyl sulfoxide (DMSO, A503039) and ferric ammonium citrate (FAC, A500061) were got from Sangon Biotech (China). Deferoxamine (DFO, D9533) and protoporphyrin IX zinc(II) (ZnPPIX, 282820) were purchased from Sigma-Aldrich (United States). Z-VAD-FMK (HY-16658B), ferrostatin-1 (Fer-1, HY-100579) and doxorubicin hydrochloride (DOX, HY-15142) were purchased from MedChemExpress (United States). And the antibody to ACSL4 (ab155282), GPX4 (ab125066), xCT (ab175186), HO-1 (ab82585), TfR1 (ab84036), FTH1 (ab65080) and NCOA4 (ab86707) were all purchased from Abcam (United Kingdom). Anti-β-actin and goat anti-rabbit IgG H&L were purchased from Bioker (China).
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9

Western Blot Analysis of Protein Markers

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Total protein was extracted by RIPA lysis buffer (P0013, Beyotime) from cells. The concentration of the total protein was detected by the BCA kit (Bio-Rad, Hercules, CA, USA). Approximately 20 μg protein was separated by 12% SDS-PAGE and then transferred onto a PVDF membrane followed by blocking with 5% skimmed milk at 25 °C for 2 h. After that, PVDF membrane was incubated with primary antibodies overnight at 4 °C. Primary antibodies: HBx (1:1000, ab2741, Abcam), PRMT9 (1:1000, PA5-48942, Invitrogen), FTH1 (1: 1000, ab65080, Abcam), GPX4 (1:1000, sc-166570, Santa Cruz Biotechnology), 4-HNE (1: 1000, ab46545, Abcam), HSPA8 (1: 4000, 10654-1-AP, Proteintech), MMA (1:1000, 8015S, CST), sDMA (1:1000, 13222S, CST), GAPDH (1:2000, 60004-1-Lg, Proteintech). Next, the PVDF membranes were incubated with secondary antibodies: Goat Anti-Mouse IgG H&L(HRP) (1: 1000, ab205719, Abcam) and Goat Anti-Rabbit IgG H&L(HRP) (1: 20000, ab6721, Abcam) for 2 h at 25 °C. The bands were exposed to ECL reagent and photographed by Chemiluminometer (Clinx Science Instruments, Shanghai, China) and quantified by Image J software.
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10

Protein Expression Analysis in Neuroprotective Mechanisms

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Proteins were extracted from the neuron and the peri-hematoma cortex tissue as described previously [24 ]. Immunoblot analyses were performed using the following primary antibodies: cleaved-caspase3 (1:500; ab49822; abcam), GP4X (1:750; 14432-1-AP; proteintech), FTH1 (1 μg/ml; ab65080; abcam), ACSL-4 (1:100; 22401-1-AP; proteintech), SLC7A11 (1:1000; 26864-1-AP; proteintech), occludin (1:1000; 27260-1-AP; proteintech), claudin-5 (1:5000; ab131259; abcam), ZO-1 (1:5000; 21773-1-AP; proteintech), β-actin (1:5000; 66009-1-Ig; proteintech) at 4 °C overnight. Secondary antibodies included anti-rabbit IgG and anti-mouse IgG (1: 5000; SA00001-1; SA00001-2; proteintech). The proteins were visualized using the ChemiDoc XRS imaging system.
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