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30 protocols using anti phospho eif2α ser51

1

Antibody Reagents for Cell Signaling Studies

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Rabbit antibodies were as follows; anti-BiP from Sigma or a kind gift of Linda M. Hendershot, anti-phospho-eIF2α (Ser51), anti-phospho-PERK and anti-DARPP-32 (a kind gift of Beth Stevens) from Cell Signaling, anti-GFP from Santa Cruz, anti-CHOP and anti-GADD34 were a kind gift of David Ron. Mouse monoclonal antibodies were as follows; anti-GAPDH from Chemicon International, anti-total eIF2α from Cell Signaling and anti-ATF6 from Abnova. Goat anti-mouse IgG conjugated to Cy2 or to dylight 549, goat anti-rabbit IgG conjugated to Cy3 or to dylight 488, and goat anti-rabbit and anti-mouse IgG conjugated to HRP were from Jackson Labs. Normal goat serum was from Vector Laboratories (Burlingame, CA).
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2

Immunoprecipitation of eIF2α and p-eIF2α

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HEK-293T or HeLa cells were transfected with plasmids, as indicated in the figures, and cultured for 24 hours before collecting the protein lysate. All cells were washed with precooled PBS before collection and lysed in cell lysis buffer for western blotting and IP (Beyotime, P0013) supplemented with a 1% protease inhibitor cocktail (MedChemExpress, HY-K0010) and a 1% phosphatase inhibitor cocktail (Yeasen, 20109ES05) for up to 30 min at 4°C, after which they were centrifuged at 12,000 g for 10 min. Rat cerebral cortex and spleen samples were homogenized in cell lysis buffer with an electric homogenizer, lysed for 1 h at 4°C, and centrifuged at 12,000 g for 10 min at 4°C. The collected supernatants were used for IP using a previously described protocol 40 (link).
The antibodies used for IP were as follows: anti-eIF2α (Proteintech, 11170-1-AP), anti-phospho-eIF2α (Ser51) (Cell Signaling Technology, 3398), and anti-DDDDK (Flag)-tag (Abclonal, AE092).
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3

Immunohistochemical Detection of Phospho-eIF2α

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Samples from cellular pellets and recovered tumors were fixed with 4% PFA for 4 h and then embedded into paraffin. After deparaffinization, eIF2α-phosphorylated staining was performed as follows. Sections of 5 μm were stained with a monoclonal anti-phospho-eIF2α (Ser51) (3597, Cell Signaling) on a Discovery Ultra automated immunostainer (Ventana, Tucson, USA). Antigen retrieval was performed by incubating slides in EDTA buffer (pH 8.0) for 32 min at 95°C. And then the antibody was incubated for 1 h at 37°C at the final concentration of 4 μg mL−1. Finally, the samples were counterstain with hematoxylin II for 12 min followed by Bluing Reagent for 8 min (Ventana). After staining, images were acquired with a Virtual Slides microscope VS120-SL (Olympus, Tokyo, Japan), 20X air objective (0.75 NA).
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4

Immunoblotting Analysis of Infected Neurons

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For Western immunoblotting analysis, infected neurons were collected in 1× LDS loading buffer (Invitrogen) containing 2.5% β-mercaptoethanol and boiled for 10 min. Proteins were separated by electrophoresis in 10% NuPAGE gels and immunoblotting was carried out as previously described (Liu et al., 2014 (link)). Densitometric analysis of the bands was performed using the ImageJ program. Comparison of data and calculation of p values were performed by using Student’s t-test.
The following primary antibodies were used: rabbit anti-ATF4 (1:1000, Cell Signaling), anti-phospho-eIF2α (Ser51; 1:1000, Cell Signaling) and mouse anti-GAPDH (1:2000; Imgenex). The anti-ATF4 has been validated by loss of signal after ATF4 knockdown with shRNAs (Liu et al., 2014 (link); Pasini et al., 2015 (link)).
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5

Evaluation of Endoplasmic Reticulum Stress Pathway

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4-PBA was purchased from Sigma Chemical Co. (St. Louis, MO, USA). Anti-GRP78, anti-eIF2α, and anti-ATF6 antibodies were obtained from Santa Cruz Biotech (Santa Cruz, CA). Anti-cleaved caspase-3, anti-phospho-eIF2α (Ser51), and anti-IRE1α antibodies were obtained from Cell Signaling Technology, Inc. (Beverly, MA). Anti-phospho-IRE1α (Ser724), Anti-MANF, and Anti-caspase-12 antibodies were obtained from Abcam (Cambridge, MA). Anti-Iba-1 antibody was purchased from Wako Chemicals USA, Inc. (Richmond, VA, USA). Anti-glial fibrillary acidic protein (GFAP) antibody was obtained from Sigma Chemical Co. (St. Louis, MO). Ketamine and xylazine were obtained from Henry Schein Animal Health (Dublin, OH).
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6

Quantitative Immunoblot Analysis of Cellular Signaling

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Muscle lysates were prepared in RIPA buffer (50-mM Tris-HCl, 150-mM NaCl, 1% NP-40, 0.1% SDS, and 0.5% sodium deoxycholate) containing protease inhibitor cocktail (Nacalai Tesque) and phosphatase inhibitor cocktail (Biotool) using a Polytron homogenizer (Kinematica). The protein concentrations of lysates were measured using the bicinchoninic acid method, and immunoblot analyses were performed as described previously [12 (link)]. Proteins were detected using anti-PERK, anti-phospho-PERK (Thr980), anti-eIF2α, anti-phospho-eIF2α (Ser51), anti-Akt, anti-phospho-Akt (Ser473), anti-p70 S6 kinase (S6K), anti-phospho-S6K (Thr389), anti-eukaryotic translation initiation factor 4E (eIF4E)-binding protein (4EBP) 1, and anti-phospho-4EBP1 (Thr37/46), which were purchased from Cell Signaling Technology. GAPDH, which was purchased from MBL international, was used as a loading control. Bands were detected using WesternSure ECL Substrate (Li-Cor Biosciences), and images were acquired using an EZ-Capture II Cooled CCD Camera System (ATTO Corp.). The band intensity was determined using ImageJ software.
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7

Western Blot Analysis of Cellular Proteins

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Crude protein extracts (50 μg) were resolved by electrophoresis in 10% sodium dodecyl sulfate-polyacrylamide gels and then transferred to PVDF Immobilon-P membranes (Bio-Rad, Mississauga, ON). Blots were blocked using 5% milk powder (Selection brand, Marché Jean-Talon, Montréal, QC) and incubated with antibodies using a dilution of 1:500 for anti-β-actin, a 1:250 dilution for anti-CaMKII beta subunit and anti-CaMKII gamma subunit (Santa Cruz Biotechnology, Santa Cruz, CA), a 1:500 dilution for anti-CHOP, a 1:1000 dilution for anti-LC3B, anti-ATF4, anti-phospho eIF2α (Ser51), and a 1:10000 dilution for anti-eIF2α (Cell Signaling). Immunoreactive proteins were exposed to anti-rabbit or anti-mouse horseradish peroxidise-conjugated secondary antibodies (Millipore) that were diluted 1:5000. Antigen-antibody complexes were detected using Immobilon ECL Western Chemiluminescent HRP Substrate (Millipore) and recorded with a VersaDoc imaging system (Bio-Rad).
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8

Investigating PKR-Mediated Inflammatory Signaling

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The PKR inhibitor C16 and lipopolysaccharide (LPS) (Escherichia coli O111: B4) were provided by Sigma-Aldrich (St. Louis, MO, USA). Primary antibodies against IKKα/β (phospho S176+S177); IKKα; IKKβ; nuclear factor kappa B (NF-κB) p65 (phospho S536); NF-κB; IκBα (phospho S32); IκBα; PKR; apoptosis-associated speck-like protein (ASC); NOD-, LRR- and pyrin domain-containing protein 3 (NLRP3); caspase-1; and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were provided by Abcam (Cambridge, MA, USA). The anti-phospho-PKR (Thr451) antibody was obtained from ThermoFisher (Shanghai, China). The anti-phospho-eIF2α (Ser51) and anti-eIF2α antibodies were from Cell Signaling Technology (Danvers, Massachusetts, USA).
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9

Western Blot Analysis of Phosphorylated eIF2α

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Cells were lysed in 50 mM Tris/HCl pH 7.6, 150 mM NaCl containing 1% Triton-X100, 10 μg/ml leupeptin, 10 μg/ml aprotinin and 0.1 mM phenylmethylsulfonyl fluoride (PMSF) and clarified by centrifugation at 15,000 g for 15 min. Proteins were resolved by SDS PAGE and transferred onto a polyvinylidene difluoride (PVDF) membrane (Bio-Rad). For Western blot analysis, membranes were blocked in PBS, 0.1% Tween 20, 5% BSA for 1 h followed by incubation overnight at 4°C with one of the following rabbit polyclonal antibodies: anti-eIF2α (cat #9722) or anti-phospho-eIF2α (Ser51, cat #9721) (Cell Signaling). After being washed three times in PBS, 0.1% Tween 20, membranes were incubated for 1 h with goat anti-rabbit horseradish peroxidase-conjugated IgG (Sigma) in blocking solution. Membranes were then washed extensively in PBS, 0.1% Tween 20 and developed by using enhanced chemiluminescence detection reagents (Amersham Biosciences) in accordance with the manufacturer’s protocol.
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10

Western Blotting of Cellular Stress Markers

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Western immunoblotting was performed as previously described [15 (link)]. The primary antibodies used in this study were anti-cleaved caspase 3 and anti- phospho-eIF2α (Ser51) (Cell signaling tech, Danvers), anti-GAPDH (Proteintech, Chicago), anti-ATF4 (Wanlei Bio, Shenyang, China), anti-GADD153/CHOP (Wanlei Bio, Shenyang,China), anti-ATF3, anti-eIF2α, anti-pPERK and anti-PERK (Santa Cruz biotech, Santa Cruz). HRP conjunct secondary Antibodies were purchased from Jackson immune Research-laboratories (Western Grove, PA). The PVDF membrane was purchased from Millipore (Millipore, Billerica) and ECL substrate was purchased from Thermo Fisher (Thermo Fisher, Waltham).
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