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7890b 7000d system

Manufactured by Agilent Technologies
Sourced in United States

The 7890B-7000D system is a gas chromatography-mass spectrometry (GC-MS) instrument manufactured by Agilent Technologies. It is designed to analyze and identify compounds in complex samples. The system combines a 7890B gas chromatograph with a 7000D triple quadrupole mass spectrometer, providing high-performance separation and detection capabilities.

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2 protocols using 7890b 7000d system

1

Quantification of Fatty Acids by GC-MS

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The cell samples were added with 1 mL extract of chloroform: methanol (2:1 v/v) and vortexed for 1 min. Then, 0.5 mL of phosphate-buffered saline (PBS) was added to the samples and mixed thoroughly to remove the supernatant. Nitrogen was used to dry the samples, mixed with 2 mL of acidified methanol, and incubated at 80 °C for 2 h. After methyl esterification, the samples were extracted with hexane (1 mL of hexane). To quantify medium- and long-chain fatty acids, Supelco 37-component FAME (fatty acid methyl ester) mix (Sigma-Aldrich) was used to construct a calibration curve for the concentration range of 0.5–1000 mg/L. The extracted sample was analyzed by GC–MS operating in a single ion monitoring mode using an Agilent 7890B-7000D system with an Agilent DB-WAX capillary GC column. The initial temperature was 50 °C, maintained at this temperature for 3 min, increased to 220 °C at 10 °C/min, and maintained at 220 °C for 20 min. A quality control sample was used to test and evaluate the stability and repeatability of the system. The temperature was set to 280 °C for the injection port and 230 °C for the ion source. The electron bombardment ionization source, selected ion monitor scanning mode, and electron energy were 70 eV. Mass data were analyzed using ChemStation (Agilent) to determine the concentration of each compound.
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2

Methylation Analysis of Polysaccharide Linkages

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A slightly modified methylation method was used based on that of (Nie et al., 2011) was used to analyze the assignments of linkages in these six fractions. Briefly, the dried sample (2-3 mg) was dissolved in 2 mL of anhydrous dimethyl sulfoxide (DMSO) by sonication for 3 h and then stirred at 80 °C for 2 h, following by stirring at room temperature overnight to completely dissolve the sample. 30 mg of dried sodium hydroxide powder was added to the solution and stirred at room temperature for 3 h. To the mixture was then added 1 mL methyl iodide and the mixture stirred for another 2.5 h to enable the methylation reaction to take place.
A few drops of deionized water were added to terminate the reaction and the methylated sample was extracted with 3 mL methylene chloride, followed by hydrolysis with trifluoroacetic acid and acetylation with acetic anhydride, to obtain the partially methylated alditol acetates (PMAAs). The PMAAs were then dissolved in methylene chloride and injected into an Agilent 7890B/7000D system equipped with a SP-2330 column (Agilent, USA). The system temperature program was increased from 160 °C to 210 °C at 2 °C/min and then to 240 °C at 5 °C/min (Wang, Yin, Huang, & Nie, 2020) .
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