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8 protocols using ab176660

1

Protein Expression Analysis of Hippocampal Cells

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Hippocampal cells and cerebrospinal fluid were obtained as described previously (34 (link)), homogenized in lysate buffer containing protease inhibitor and centrifuged at 8,000 g/min at 4°C for 10 min. Total protein was extracted from the resulting supernatant using a Protein Extraction kit (20021; Qiagen Sciences, Inc., Gaithersburg, MD, USA), according to the manufacturer's instructions. SDS assays were performed as described previously (35 (link)). For western blot analysis, primary antibodies anti-bax (1:1,000; ab32503), anti-Bcl-2 (1:1,000; ab194583), anti-caspase-3 (1:1,000; ab13847), anti-caspase-9 (1:1,000; ab18571), anti-p38 (1:1,000; ab31828), anti-ERK (1:1,000; ab176660), anti β-actin (1:1,000; ab8226; all Abcam; Cambridge, UK) were added to PVDF membranes (EMD Millipore) and incubated at 4°C overnight. Membranes were blocked in 5% skimmed milk for 1 h at 37°C and then incubated with HRP-conjugated goat anti-rabbit IgG mAb (PV-6001; ZSGB-BIO) for 24 h at 4°C. A Ventana Benchmark automated staining system was used to determine protein expression in tumor tissues (Olympus BX51; Olympus Corporation).
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2

Quantifying ERK1/2 Activation in LoVo Cells

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Total and p-ERK1/2 content was measured using an ERK1/2 (pT202/Y204 + Total) enzyme-linked immunosorbent assay kit (ab176660, Abcam, Cambridge, UK) following the manufacturer’s protocol. LoVo cells (5 × 104) were incubated in a 96-well plate treated with Compound A at indicated concentrations for 1 hour. The cells were then washed with PBS and lysed in lysis buffer. Standards for ERK1/2 and p-ERK1/2 were run simultaneously in parallel. Samples were incubated in antibody solution for 1 hour with gentle shaking at room temperature. After washing, TMB substrate was added to each well and incubated for 15 minutes. Optical density was recorded at 450 nm using a plate reader.
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3

Fanconi Anemia Pathway Regulation

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CRA (98%) was purchased from Shanghai Acmec Biochemical Co., Ltd. (123-73-9, Shanghai, China), and HAECs were purchased from BeNa Culture Collection (BNCC337727; Beijing, China). Fanconi anemia complementation group A (FANCA) small interfering RNA (siRNA) and siRNA-Mate were synthesized and provided by GenePharma Co., Ltd. (G04002, Shanghai, China). Glutathione peroxidase (GSH-Px) assay kits were obtained from the Jiancheng Bioengineering Institute (A005; Nanjing, Jiangsu, China). Phospho-extracellular signal-regulated kinase (P-ERK, ab176660), phospho-c-Jun N-terminal kinase (P-JNK, ab176645), phospho-p38 kinase (ab221013), cyclooxygenase-2 (COX-2, ab267646), Wnt3a (ab54479), β-catenin (ab16051), phospho- ErbB2 (ab101229), and phospho-ErbB4 (ab61059) ELISA kits were purchased from Abcam (Cambridge, UK), and mitochondrial membrane potential assay kits were obtained from Abbkine Scientific Co., Ltd. (KTA4001; Wuhan, Hubei, China).
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4

Measuring ERK Phosphorylation in Pituitary Cells

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Semiquantitative sandwich ELISA kit (Abcam, ab176660) was used to measure ERK phosphorylation (pERK) and total ERK (pERK/ERK) in LβT2 and αT3-1 cells in response to Gas6 (100 nM) at different time points and GnRH (10 nM, 5 min) was used as a positive control. Briefly, cells were seeded at 8 × 104 cells/well in 6-well plates and incubated for 2 days until 60–70% confluent. Cells then were washed with 1X PBS two times and media was changed to 2 mL/well charcoal stripped DMEM and incubated at 37 °C in 5% CO2 humidified air over night (12 h). Cells were then treated with Gas6 and/or GnRH for 5 min to 2 h; cell extracts were then obtained with RIPA Lysis and Extraction Buffer (Thermo Scientific) containing Halt Protease and Phosphatase Inhibitor Cocktail (Thermo Scientific) was collected in separate tubes. BCA assay was performed to determine protein concentrations prior to ELISA analysis according to the manufacture’s protocol.
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5

Measuring Growth Factor and Kinase Activation

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ELISAs for measuring bFGF (Quantikine basic FGF ELISA, R&D Systems, DFB50), phosphoERK and total ERK (Abcam, ab176660) were performed following the manufacturer’s recommended protocol. MCMs were confirmed not to interfere with bFGF Quantikine ELISA readouts (Supplementary Fig. S14). For phosphoERK and total ERK assays, 10 μg total protein was loaded per well of the ELISA based on protein concentration of cell lysates as quantified by microBCA.
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6

Quantitative Protein Analysis Workflow

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Lysed in RIPA buffer, CC cells were subjected to protein quantification via a bicinchoninic acid assay. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis was applied for the separation of proteins, followed by transferring to polyvinylidene difluoride membranes. After blocking, the membrane was incubated with primary antibodies. Further, the horseradish peroxidase-conjugated secondary antibodies (Abcam, Cambridge, UK) were supplemented. The enhanced chemiluminescence system (Thermo Fisher Scientific) was employed for evaluating the protein bands, and the proteins were quantified via Image J software (National Institutes of Health, Bethesda, MD, USA). The primary antibodies used in this study included anti-FLOT2 (1:3000, ab96507, Abcam), Vimentin (1:1000, ab16700, Abcam), N-cadherin (1/1000, ab245117, Abcam), E-cadherin (1 µg/ml, ab231303, Abcam), MEK (1:10000, ab32576, Abcam), p-MEK (1 µg/ml, ab278716, Abcam), ERK1/2 (1/10000, ab184699 Abcam), and p-ERK1/2 (0.2 ng/ml, ab176660, Abcam).
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7

Immunofluorescence Staining of Cells

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Cells were seeded onto poly-d-lysine-coated coverslips. Then, methanol-free 4% paraformaldehyde was used to fix cells for 15 minutes at room temperature. Subsequently, samples were blocked with 5% goat serum at room temperature for 45 minutes. After washing with TBST, samples were incubated with primary antibody at 4°C overnight. The primary antibodies used in the present study were as follows: p-ERK (1:1,000, #ab176660), Yap (1:1,000, #14074), Tom20 (1:1,000, #ab186735), and cyt-c (1:1,000, #ab90529; Abcam). Subsequently, samples were rinsed three times with TBST for 15 minutes and followed by incubation with secondary antibody for 45 minutes at room temperature; after rinsing three times for 5 minutes using TBST, the samples were labeled with DAPI to tag the nuclei. Cells were observed using a laser confocal microscope (TcS SP5).27 (link)
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8

Protein Expression Analysis by Western Blot

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Harvested cells (2×106) were placed into 1.5 mL Eppendorf tubes and mixed with cell lysate [99 µL cell lysate + 1 µL phenylmethylsulfonyl fluoride (PMSF)] and incubated on ice for 30 min. They were then centrifuged at 3,500 rpm for 30 min at 4 °C, the liquid (total protein) was carefully removed into another EP tube. Western blot was performed using a 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). After separations, the proteins were transferred to a polyvinylidene fluoride (PVDF) membrane. Membranes were blocked with 5% skimmed milk at 37 °C for 1 h. Membranes were incubated 1:1,000 dilutions of the following primary antibodies: anti-ERK (ab32537), anti-p-ERK (ab176660), anti-p38 MAPK (ab197348), anti-p-p38 MAPK (ab176664), and anti-microtubule protein (ab11304) (Abcam, USA). Then, the membranes were incubated with a 1:2,000 dilution of anti-rabbit or anti-mouse secondary antibody conjugated with horseradish peroxidase (Santa Cruz Biotechnology, Dallas, TX, USA). Image J software (National Institutes of Health, Bethesda, MD, USA) was used to detect the protein expression.
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