For algae that were used for quantifying the abundance of LD per cell, a ZEISS Axioscope 7 microscope (Carl Zeiss) was used including the Zen software (Carl Zeiss). The LD count was carried out in Fiji159 (link). For statistical analysis of the LD count data, we first used a Shapiro–Wilk test160 (link) to assess normality and used Mann–Whitney U tests161 (link) with R (version 3.6.1) accordingly.
Confocal laser scanning microscope was done on a Zeiss LSM780 (Carl Zeiss) set as in Müller et al.162 (link). For the staining of the LD structures, we used the neutral lipid specific stain BODIPY 493/503 (EM/EX) (Merck). Mesotaenium cells were grown for 22 days on WHM medium at 70–80 µmol photons m−2 s−1 and 22 °C. These cells were ultrasonicated for 1 min with 1:500 BODIPY and incubated on a shaker for 5 min before visualization.