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42 protocols using eos 1100d

1

Cataract Scoring in Diabetic Rats

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Cataracts were scored every week beginning at 3 weeks post STZ treatment. Following general anesthesia with isoflurane and pupil dilation with tropicamide (0.5% tropicamide and 0.5% phenylephrine; Xingqi Pharmaceutical, Shenyang, China), images of the rat lens were obtained with a Canon camera (Canon EOS 1100D, China) connected to a stereomicroscope (XTL-165, Phenix, China) using a digital camera microscope adapter (G2540, Cossim, China). Cataracts were scored according to the formation and progression of lenticular opacity as follows: 0: clear normal lens; 1: peripheral vesicles of lens; 2: peripheral vesicles and cortical opacities; 3: diffuse central opacities; 4: mature nuclear cataract.
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2

Microscopy Imaging Protocol

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Microscopic images were visualized with Oympus IX70 or Olympus BX51 microscopes (Olympus Corporation, Tokyo, Japan) and Canon EOS1100D digital photo camera (Canon Inc., Tokyo, Japan) or Olympus XC50 camera.
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3

New Catomus Species Discovery Protocol

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Field investigations carried out, in November 2015 and November 2016, by two of the authors (PP and PLC), in the framework of the "École de terrain" of Master Environnement (Aix-Marseille Université-AMU) on several islands of the Aeolian archipelago, have revealed the occurrence of a new species belonging to the genus Catomus that is described hereafter. The majority of the specimens are preserved in private collections, however the name-bearing types were deposited in the public institutions listed below. Male genitalia were dissected, then glued on white mounting cards. Photographs were taken with a Canon macro photo lens MP-E 65 mm mounted on a Canon EOS 1100D. For each specimen, about 10 focal planes were superimposed with the "stacking" software Helicon Focus version 6.7.1 Pro (May 27, 2016) (www.heliconsoft.com/heliconsoft-products/helicon-focus). Photographs were processed using Adobe Photoshop CS5 version 12.0 software. Measurements were made with a 10x eyepiece grid mounted on a stereo-microscope.
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4

Early Root Traits in Hydroponics

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The same nine varieties grown in the pot experiment were tested in hydroponic pouches to investigate differences in early rooting. A randomised block design of 36 blocks, each with two replicates of each variety was established (n= 648).
Seeds were directly sown into pouches set up according to Atkinson et al., (2015) on 23 October 2015 (Fig S1) . Conditions in the controlled environment room (CER) were maintained at 18°C day and 8°C night and a photoperiod of 16 hours. The tanks into which the pouches were suspended were initially filled with 2 litres of ¼ strength Hoaglands No. 2 Basal Salt mixture (Sigma Aldrich, Gillingham, Dorset, UK) and then were topped up using deionised water only. After 21 days in the CER the pouches were removed and the roots of the seedlings photographed using a digital camera (Canon Eos 1100D fitted with 18-55mm Lens, Canon Inc. Japan) and copy-stand. The photographs were then analysed using RootReader2D version 2.3 (Clark et al., 2013) (link) to measure primary and lateral root lengths.
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5

Comprehensive Protein and Nucleic Acid Analysis

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Protein quantification was carried out using a NanoDrop 2000c spectrophotometer from ThermoFisher Scientific Inc. (USA). All size-exclusion chromatography was carried out on an NGCTM Medium-Pressure Chromatography System from Bio-Rad Laboratories, Inc (USA). Agarose gel electrophoresis (AGE) was performed on Mini-Sub® cell GT from Bio-Rad Laboratories, Inc. (USA). Gel images were captured using an EOS 1100D from Canon (Japan). Electron microscopy images were obtained on a TFS Tecnai F20 FEG (USA). Fluorimetry was carried out on a QuantaMasterTM 50 fluorometer from Photon Technology International (USA). Confocal fluorescence microscopy images were obtained on an SP8-AOBS from Leica (Germany). Flow cytometry was carried out on an LSRFortessa from BD Biosciences (USA).
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6

Automated Imaging of Plant Seeds

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Bright field images, and GFP and RFP fluorescence images of Arabidopsis seeds were collected using a LeicaMZ16FA fluorescence stereomicroscope (Leica, Wetzlar, Germany). F2 seeds were placed on the microscope platform by uniformly distributing them on a sheet of paper in a line-shape with a diameter of ~ 1.5–2 cm (in total approximately 3000–5000 seeds). By moving the platform of the microscope following this line at a zoom drive of 7.17×, ten non-overlapping bright field (exposure: 1.1 s, gain: 1.0, saturation: 1.0, gamma: 1.21), RFP (exposure: 1.1 s, gain: 1.0, saturation: 1.0, gamma: 1.21) and GFP (exposure: 4.0 s, gain: 1.0, saturation: 1.0, gamma: 1.21) images were captured and stored as 2592 × 1944 pixel2 TIFF files with the 1.5 × scaling setting applied. The automatic white balance function was applied on the bright field images and switched off during capturing of the fluorescence images. The same settings were used for all images collected. Bright field images of rapeseeds and barley grains were collected using a fixed digital camera setup (Canon EOS 1100D). Because fluorescence images could not be captured for these species, the bright field images were also used as input for fluorescence classification to allow normal operation of MeioSeed.
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7

Gastric Lesion Quantification Protocol

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The stomach and small intestine of each animal was thrown out and opened along its greater curvature. The tissue was gently rinsed in NaCl 0.9%. The lesions in the gastric mucosa were macroscopically examined and the photographs of hemorrhagic erosions were taken by Canon EOS1100 D (ISO 6400) digital camera. Ulcer indexes were determined as the sum of the lengths of the whole gastric lesions (mm2). Two independent, blinded observers performed the measurements of lesion lengths.
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8

Macro Imaging with Canon EOS 1100D

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Macro images were taken using Canon EOS 1100D. Images were made into combined figures using Inkscape.
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9

Time-lapse imaging of leaf movement

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For all leaf movement experiments, Canon EOS 1100D high resolution cameras were used. Cameras and plates were fixed to avoid positional changes in the course of the experiment. White paper was affixed behind the plates to increase the contrast of the plants to the background. Three cameras were controlled by one computer using the Linux-based program gphoto2. Focus settings were set on manual and checked before each experiment started. Pictures were taken for seven days at a rate of one picture every 10 min.
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10

Multimodal Facial Expression Analysis

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The interviewers were presented on a monitor (Lenovo, 2880×1620 pixels, 34.31×19.30  cm) and controlled by a native Latvian member of the experiment team through a Unity game engine in the same room. The viewing distance was 60 cm. Eye movements were recorded by Tobii Pro Nano with a 60 Hz refresh rate and calibrated before each session by the Tobii Pro Lab. Facial expressions were monitored by the web-camera (Logitech—the C270 HD Webcam, 720p/30fps), and body language was recorded by the RGB camera (Canon EOS 1100 D, 25 fps). In addition, heart-beat ratios were monitored using a smartwatch (Fitbit Versa 2) every five seconds, but the research has focused on facial expressions data in this paper, and thus, the data of heart-beat ratios, eye tracking, and body language were not used.
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