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38 protocols using dx500

1

Groundwater Characterization Using Advanced Analytical Methods

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The concentrations of oxygen, NO 3- , and SO 42- were measured as detailed in Lazar et al. (2017 (link)). Changes in the oxygen concentrations were measured in the headspace of the oxic incubations using a 5890A gas chromatograph (Hewlett-Packard, USA) with a thermal conductivity detector. The different anions in the groundwater were measured on an ion chromatography system DX-500 (Thermo Fisher Scientific GmbH, Dreieich, Germany) or ICS-5000 (Thermo Fisher Scientific GmbH, Dreieich, Germany). The hydrogen isotope compositions of the water were analyzed using a high-temperature reactor (TC/EA) coupled online via a ConFlo III interface to a Delta+ XL isotope ratio mass spectrometer (all units from Finnigan MAT). The results were calibrated using in-house standards and the Vienna Standard Mean Ocean Water (VSMOW) and Standard Light Antarctic Precipitation (SLAP), according to Gehre et al. (2004 (link)).
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2

Sucrose quantification in seedlings

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The amount of sucrose in seedlings was measured with an ion chromatography system (DX-500; Thermo Fisher Scientific, Waltham, MA, USA) using a CarboPACTM PA1 column as described previously (Ferjani et al., 2011 (link)). Four hundred frozen seedlings were homogenized in chilled 80% ethanol, vortexed for 10 min, treated at 80°C for 30 min, and then centrifuged at 20,000 × g for 5 min. The precipitate was resuspended in chilled 80% ethanol and centrifuged. The first and second supernatants were combined and dried by a centrifugal evaporator. An aliquot of water was added into the tube, and water-soluble compounds were extracted. The extract was filtered with a Sep-Pak Light C18 filter (Waters, Milford, MA, USA) and then with a Dismic-13cp (Advantech, Tokyo, Japan). Data from at least three independent measurements were averaged.
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3

HPAEC-PAD Analysis of Carbohydrates

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Sugar solutions (glucose, fructose, sucrose, maltose and maltotriose, all from Sigma Aldrich) were used as standards at concentrations of 0-0.2 g mL -1 . Samples and standards were spiked with internal standard (fucose, final concentration of 0.05 g mL -1 ). Samples were filtered through PTFE membrane filters (0.2 µm pore size, Chromacol Ltd) and analyzed by HPAEC-PAD (Thermo Fisher DX500 instrument equipped with a GP40 gradient pump, ED40 electrochemical detector including gold working and silver reference electrodes and a LC20 column oven set at 30 o C). The analytical column used was CarboPac PA20 (3×150mm) with guard (3×30mm) with anion exchange capacities of 65 eq/column. The mobile phase was 200 mM NaOH and the flow rate was 0.4 mL/min. Injections (10 µL) were made by an AS500 autosampler. The elution programme was as follows: isocratic elution with 60mM NaOH from 0 to 8 min, followed by increasing gradient up to 140 mM NaOH to 17 min. The concentration was reduced back to 60mM and equilibration was carried out for 6 min.
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4

Ice core ion chemistry analysis

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We use ion data from DF1 and DF2 cores after and before 300,000 BP, respectively14 . Na+, Ca2+, Mg2+, NO3, and SO42− were measured from both cores using ion chromatography. In addition, K+ was measured from DF2 core. For DF1 core, we use previously published data50 after re-examination and removal of some data points because of large measurement errors. Fifty-nine samples were newly cut from DF1 core, re-measured, and the new data were added to the earlier dataset. Measurement errors were generally less than 10% but may be higher for low concentrations. For DF2 core, 10-cm-long samples were cut every 0.5 m and measured on two Dionex DX-500 ion chromatographs: one for anions and the other for cations. Measurement errors were estimated to be less than 3%. Sea salt (ss) Na+ and non-sea-salt (nss) Ca2+ concentrations were calculated from Na+ and Ca2+ concentration data using the weight ratios of Ca2+/Na+ for seawater (0.038) and average crust (1.78), as described in previous studies7 (link)–9 (link),16 (link),51 (link). The nssSO42− concentrations were calculated assuming a sea ice source7 (link),8 (link) of ssNa+. Similar values are obtained if we assume an open ocean source7 (link),8 (link) of ssNa+. Fluxes of nssCa2+ and nssSO42− were calculated by multiplying concentrations by estimated accumulation rates14 .
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5

Sulfate Quantification by HPAEC

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Sulfate content in the samples was quantified by high-performance anion-exchange chromatography (HPAEC) using a Dionex DX-500 (Dionex, Sunnyvale, CA, USA), as previously described by Chopin et al. [20 (link)].
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6

Quantifying Linked Ester Sulfate in EPS

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High-Performance Anion-Exchange Chromatography (HPAEC) was used to quantify the linked ester sulphate group content in the native GY785 EPS and its derivatives, as previously described by Chopin et al. [44 (link)]. HPAEC analyses were carried out with a Dionex DX-500 ion chromatographic instrument controlled using Chromeleon® software.
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7

Soil Analysis for Microbiome Experiments

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General soil analysis for the soil type used in the first part of the experiments (Section 2.1) was performed using ASTM standards for sieving, gravimetric water content (GWC), soil porosity, and bulk density determination prior to the experimental setup. A Dionex DX 500 ion chromatograph with PeakNet software was used for extractable ionic nitrogen species analysis at the end of the experiment to determine nutrient utilization (Section 3.3). Additional analyses for nitrogen and carbon concentration were done using an elemental combustion system (Costech Instruments).
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8

Quantification of Toluene and Nitrates

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Toluene concentration was measured using a GC-FID (Agilent HP7890, USA) equipped with a 30 m x 320 μm x 5 μm film thickness Agilent DB-MTBE column. The analytical setup was according to Martinez-Lavanchy et al. [30 (link)].
Nitrate (NO3-) and nitrite (NO2-) concentrations were measured using ion chromatography (DX 500, Dionex, USA). The column used for the analysis was an IonPac AG4A-SC (4x50 mm and AS4A-SC 4x2501).
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9

Quantification of Linked Ester Sulfate

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The linked ester sulfate groups were quantified by High-Performance Anion-Exchange Chromatography (HPAEC) using Dionex DX-500 ion chromatographic instrument controlled with Chromeleon® software (Dionex, Sunnyvale, CA, USA), as previously described by Chopin et al. [50 (link)].
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10

Comprehensive Water Quality Analysis

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Major anions, including Cl and SO42−, in water samples were analyzed using Ion Chromatography (Dionex DX500) following the EPA method 300 at Queens College. Alkalinity was measured using the Gran titration method. Major cations and trace elements, including As, were analyzed using the High Resolution Inductively Coupled Plasma Mass Spectrometry (VG Elemental, Axiom) (Cheng et al., 2004 (link)) at Lamont-Doherty Earth Observatory. H and O isotopes were analyzed by a gas-source isotope ratio mass spectrometer (Finnigan Delta S) using VSMOW for standardization in the Environmental Isotope Laboratory at the University of Arizona.
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