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4 protocols using pe magnetic beads

1

Purification of Murine Hematopoietic Progenitors

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Prepared bone marrow cells from 8–12-week-old BALB/c mice, then depleted lineage positive cells by using a mixture of phycoerythrin (PE)conjugated monoclonal antibodies directed against surface antigens (derived from blood cells including CD11b, CD5, CD8a, CD4, Gr-1, CD45R, Ter119) were purchased from BD Biosciences (San Jose, CA) and PE magnetic beads were purchased from Miltenyi Biotech (Surrey, U.K.). Purified Lin (-) cells were then further purified using a cocktail solution of supravital dyes. Principally, Lin- cells were suspended in FACS stain buffer (1XHBSS buffer) containing Rhodamine-123 and Hoechst-33342 for 15 min; labeled cells were then sorted on FACS-STAR (Becton Dickinson), the Lin-Rholow/HoechstBright(LRB) represented late stage progenitor cells and the Lin-Rholow/HoechstLow(LRH) represented more primitive progenitor cells, were highly enriched from Lin- population and used for Malat1 expression analysis.
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2

Enrichment Protocol for T-cell Frequency Analysis

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Direct analysis of T-cell frequency was accomplished using our previously published enrichment approach (12 (link)). Briefly, 30–50 × 106 PBMCs were resuspended in 200 µL of T-cell media, incubated with 50 nmol/L dasatinib for 10 min at 37°C, and stained with 20 μg/mL phycoerythrin (PE)-labeled tetramer at room temperature for 100 min, followed by antibody staining with CD4-APC (eBioscience), CD45RO-FITC (eBioscience), and a combination of CD14-PerCP and CD19-PerCP (BD Biosciences) for 15 min at 4°C. Cells were washed, incubated with PE magnetic beads (Miltenyi Biotec) for 20 min at 4°C, and enriched with a magnetic column, retaining 1% of the cells as a nonenriched sample. The PE-enriched and precolumn samples were labeled with Via-Probe (BD Biosciences) and analyzed on a FACSCalibur (BD Biosciences), gating on CD4+CD14CD19Via-Probe and plotting tetramer versus CD45RO. Frequencies were calculated as previously described (12 (link)). Statistical analysis was performed using unpaired t tests with Welch correction with Prism software (version 5.03, GraphPad Software Inc.).
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Quantifying Antigen-Specific T-Cell Frequencies

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Analysis of T-cell frequency was accomplished using our previously published approach (26 (link)). Briefly, 40–60 × 106 PBMCs were resuspended in a total of 400–600 µL media, divided into two or three independent tubes of 20 × 106 cells (200 µL) each, incubated with 50 nmol/L dasatinib for 10 min at 37°C, and stained with 20 µg/mL PE-labeled, PE-CF594–labeled, or PE-Cy5–labeled HIP tetramers at room temperature for 120 min (three tetramers per tube for a total of six hybrid peptide tetramers plus an nonimmunogenic control tetramer if adequate cells were available for a third staining tube). Cells were washed, incubated with PE-magnetic beads (Miltenyi Biotec) for 20 min at 4°C, and magnetically enriched; 1% of the cells were retained as a nonenriched sample. Enriched (bound) and nonenriched (precolumn) samples were stained with CD4 V500, CD14 PerCP-Cy5.5, and CD19 PerCP-Cy5.5 (eBioscience) and CD45RA AF700 (BD), CXCR3 FITC, CCR6 BV421, and CCR4 BV605 (BioLegend) for 15 min at 4°C. After washing, cells were labeled with ViaProbe (BD Biosciences) and analyzed on a FACSCanto (BD Biosciences), gating on CD4+CD14CD19ViaProbe cells and plotting tetramer versus CD45RA. Frequencies were calculated as previously described (26 (link)).
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4

Foxp3-Expressing CD4+ T Cell Isolation

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Primary CD4+CD25 T cells were isolated from mice and stimulated with 3 ng/ml PMA and 1 μM ionomycin overnight. Cells were then treated with MSCV-Foxp3-NGFR or MSCV-NGFR control retroviral supernatant containing 8 μg/ml polybrene and centrifuged for 90 min at 2,500 rpm. Cells were rested for 5 h and then plated with fresh media and 10 U/ml interleukin-2 for 72 h. Foxp3-NGFR or NGFR control cells were positively selected with PE magnetic beads following NGFR-PE labeling (≥90% purity, Miltenyi Biotec).
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