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4 protocols using pwzlblast gfp

1

Retroviral Plasmids for Oncogene and Kinase Studies

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Retroviral plasmids encodingHRasG12V, HRasG12V/E37G, HA-STK38 PIF, HA-STK38 PIF/kd, and shLUC have been reported [34 (link), 38 (link), 62 (link)]. To generate the pSuper.retro.puro_shSTK38-2 vector expressing shRNAs against human STK38, the following oligonucleotide pairs were inserted into pSuper.retro.puro (Oligoengine) using BglII and HindIII: 5′-GATCCCCGTCGGCCATAAACAGCTATTCAAGAGATAGCTGTTTATGGCCGACGTTTTTGGAAA-3′ and 5′- AGCTTTTCCAAAAACGTCGGCCATAAACAGCTATCTCTTGAATAGCTGTTTATGGCCGACGGG-3′ targeting the 3′UTR of STK38. For shRNA rescue experiments, HA-tagged STK38 wild-type and kinase-dead (K118A) cDNAs were subcloned from modified pcDNA3_HA into modified pWZLblast using PmeI and XhoI. Modified pcDNA_HA was generated by inserting the following oligonucleotide pairs into pcDNA3 (Invitrogen) using HindIII and BamHI: 5′-AGCTTACGCGTGTTTAAACGGTACCATGGCCTACCCCTACGACGTGCCCGACTACGCCTCCCTCG-3′ and 5′-GATCCGAGGGAGGCGTAGTCGGGCACGTCGTAGGGGTAGGCCATGGTACCGTT TAAACACGCGTA-3′. Modified pWZLblast was generated by inserting the following oligonucleotide pairs into pWZLblast GFP (12269, Addgene) using BamHI and SalI: 5′-GATCCACGCGTGTTTAAACGTTAACGAATTCTACGTACTCGAGG -3′ and 5′-TCGACCTCGAGTACGTAGAATTCGTTAACGTTTAAACACGCGTG -3′. All constructs were confirmed by sequence analysis. Further details on constructs are available upon request.
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2

Breast Cancer Cell Line Transfection

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Human breast cancer cell lines SKBR3, MDA-MB-468, MCF-7, and MDA-MB were purchased from ATCC. Cells were cultured in petri dishes with Dulbecco’s Modified Eagle Medium (DMEM; HyClone, Logan, UT, USA) supplemented with 10% fetal bovine serum (HyClone, South Logan, UT, USA), and 1% penicillin/streptomycin (Gibco, Co Dublin, Ireland) in an atmosphere of 5% CO2 at 37 °C. Cells were passaged every 2–3 days using 0.25% Trypsin (Gibco, Co Dublin, Ireland). For plasmid transfection, pWZL Blast Twist ER, pWZL Blast Snail ER, and empty vector pWZL Blast GFP were obtained from Addgene (Cambridge, MA, USA). These plasmids were transfected into cells using Lipofectamine 3000 Reagent (Thermo Fisher, Waltham, MA, USA). The validation of transfection was conducted using quantitative RT-PCR analysis.
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Plasmid Construction and RNAi Knockdown of BRMS1L

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The negative control pWZL-blast-GFP (Addgene, Plasmid #12,269) plasmid and the pWZL-blast-BRMS1L plasmid were constructed. Primers for cloning are listed in Supplementary Table 1. PCR products following digestion with EcoRI and SalI were ligated with digested pWZL-blast. To generate pLKO.1-shRNAs targeting human BRMS1L, oligonucleotides were designed and synthesized (Sangon Biotech, Shanghai, China). Following annealing, double-stranded oligonucleotides were directly ligated with the pLKO.1 puro vector (Addgene, Plasmid #8453), which was digested with AgeI and EcoRI. The sequences for mock and shBRMS1s are listed in Supplementary Table 1. All constructs were verified by sequence analysis. Cells were transfected with specific siRNA duplexes targeting GPX2 or the Pex-6 (pGCMV/MCS/REP/Neo) vector expressing the GPX2 construct using Lipofectamine 2000 (Invitrogen) according to the manufacturer's instructions.
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Retroviral Transduction of Human SNAI1 in Cells

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The cDNA of human SNAI1 was subcloned from Flag-Snail WT (Addgene 16218, Watertown, MA, USA) into pWZL-Blast-GFP (Addgene 12269) after removing GFP using BamH1/Xho1. Retroviral particles were produced in HEK293T cells after co-transfection of retrovirus plasmid vector pWZL-Blast-Flag-Snail or control vector pWZL-Blast-Flag-Empty with packaging plasmids (VSVG, Gag/pol) using polyethylenimine (PEI) (Polysciences, Warrington, PA, USA). After 48 h and 72 h, supernatant containing virus was collected and filtered through a 0.22 μM filter. Supernatants were used for cell transduction or stored at −80 °C. Cells were transduced with retrovirus in the presence of 6 μg/mL protamine sulfate and selected with 5 µg/mL Blasticidin (InvivoGen #ant-bl-05 San Diego, CA, USA) for 5 days.
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