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5 protocols using anti iba1

1

Multimodal Immunofluorescence Analysis

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Cells were fixed for 10 min in 4 % paraformaldehyde, permeabilised and incubated with primary antibodies in 1× PBS with 10 % normal serum. Primary antibodies used were anti-Olig2 (1:500; Millipore), anti-GFAP (1:400; Millipore), anti-Ki67 (1:1,000; Abcam), anti-Nestin (1:1,000; Abcam), anti-Sox2 (1:200; Santa Cruz), anti-O4 (Sigma, 1:200), anti-Iba1 (1:200, Biocare), TuJ1 (1:1,000, Covance), anti-GFP (1:2,000, Abcam), anti-bromodeoxyuridine (BrdU) (1:250, Abcam) and anti-NFκB-p65 (1:500; Abcam). Primary antibodies were visualised using specific AlexaFluor secondary antibodies (Molecular Probes), and nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI). Coverslips were mounted in Prolong Gold anti-fade mounting medium (Molecular Probes) and analysed using Zeiss AxioImager Z1 microscopes and AxioVision software.
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2

Isolation and Purification of Astrocytes

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Cortices were isolated from P21 Swiss Webster and collected in calcium/magnesium-free Hank’s balanced salt solution (HBSS), trypsinised and DNAseI treated (50 μg/ml, Sigma) for 20 min at 37 °C and mechanically dissociated into a homogenous cell suspension [28 (link)]. Following washes and centrifugation, mixed glial cells were plated onto PDL (Sigma) in DMEM/F12 (Invitrogen) with 100 U/ml penicillin/100 mg/ml streptomycin (Sigma) and 10 % FBS (Biosera). Once confluent, cultures were shaken overnight at 180 rpm to remove microglia and oligodendrocytes and treated for 4–7 days with 20 μM cytosine arabinoside (AraC) to kill remaining dividing cells and obtain essentially pure astrocytes (>98 %), determined by immunofluorescence using anti-glial fibrillary acidic protein (GFAP) (Millipore) and anti-S100β (Dako) for astrocytes, anti-Iba1 (Biocare, microglia), anti-O4 (Sigma, oligodendrocytes) and TuJ1 (Covance, neurons).
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3

Immunohistochemical Analysis of LPS-Induced Neuroinflammation

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Twenty-four hours after LPS administration, the mice were briefly anesthetized with isoflurane and then killed using cervical dislocation. The cortex and hippocampus of each mouse brain were fixed with 3.7% formaldehyde. All specimens were embedded in paraffin and sliced into 4 μm thick sections. Sections were deparaffinized and then rehydrated, antigens were retrieved, and endogenous peroxidase activity was quenched using 3% hydrogen peroxide in PBS. After the sections had been blocked with an IHC blocking reagent (Background Sniper; Biocare Medical, Concord, CA, USA) for 1 h, they were incubated with anti-Iba1 (1 : 800 dilution) (Biocare Medical), anti-HDAC2 (1 : 200 dilution) or anti-HDAC5 (1 : 200 dilution) (Abcam, Cambridge, MA) rabbit anti-mouse antibodies in blocking reagent at 4°C overnight. Slides were then washed in PBS, incubated with species-specific biotinylated secondary antibody (1 : 200) for 30 min, washed with PBS again, amplified consecutively with Avidin horseradish peroxidase (HRP) (Vector Laboratories, Burlingame, CA, USA), and visualized by incubating them with 3,3′-diaminobenzidine tetrahydrochloride (Sigma-Aldrich, St. Louis, MO, USA). All slides were counterstained with hematoxylin (Mayer's; Thermo Shandon, Pittsburgh, PA, USA), dehydrated, and mounted. For negative Controls, the procedure omitted the primary antibody.
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4

Immunohistochemical Characterization of Neuroinflammation

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Frozen mouse sections (16 µm) were fixed with 4% PFA and blocked with 10% normal goat serum with 0.3% Triton-X. Fixed brain sections were incubated with primary antibody, anti-GFAP-Alexa Flour®488 (1:400, abcam, ab302977) or anti-Iba1 (1:400, Biocare Medical, #290), overnight at 4 °C. For Iba1, sections were then incubated with Alexa Fluor-conjugated secondary antibody (1:700, Invitrogen, #A32740). For the detection of amyloid plaques, 400 nmol/L FSB (Sigma) was used. Immunostained slides were imaged under a Nikon Eclipse E600 microscope and photographed by a digital camera (SPOT RTsCMOS, SPOT Diagnostics). The images were randomly taken in a blind fashion within a defined anatomic region. The images were transformed to 8-bit grayscale and analyzed by the ImageJ program.
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5

Quantitative Analysis of Glial and Immune Markers in Brain Tissue

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Brain tissues were fixed in 10% formalin and embedded in paraffin per to standard procedures. Tissues were cut into 4-μm coronal sections, and slides were stained with anti-GFAP (Dako, Carpinteria, CA), anti-CD3 (Santa Cruz Biotechnology, Dallas, TX), anti-caspase 3 (cleaved caspase 3) (BioCare Medical, Concord, CA), or anti–Iba-1 (BioCare Medical). Slides labeled for GFAP and for IBA1 by IHC were imaged using an Aperio ScanScope (Leica Microsystems, Buffalo Grove, IL) with a 20x objective and analyzed using the corresponding ImageScope software. The area of the corpus callosum was traced in each slide to delineate the area of analysis. For GFAP, a positive pixel count algorithm was used to quantify the amount of positive labeling and results are expressed as the number of strongly positive pixels per square millimeter. For IBA1, a nuclear algorithm was used to count the number of positively labeled nuclei and results are expressed as the number of positive nuclei per square millimeter.
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