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4 protocols using rabbit anti rat biotinylated

1

Immunohistochemical Analysis of Neural Markers

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Immunohistological stainings were performed as previously described (Kandasamy et al., 2014 (link)), using the following antibodies and dilutions. Primary antibodies: rat anti-BrdU (1:500, BU1/75, AbD Serotec), rabbit anti-CD68 (1:500, ab125212, Abcam), rabbit anti-doublecortin (1:250, 4604, Cell Signaling), guinea pig anti-GFAP (1:500, GP52, Progen), rabbit anti-Iba1 (1:300, 019-19741, Wako), goat anti-Iba1 (1:250, ab107159, Abcam), anti-mouse MHCII (I-A/I-E; 1:100, 14-5321-82, eBioscience), mouse anti-NeuN (1:500, A60, Merck Millipore), mouse anti-PCNA (1:500, sc-56, Santa Cruz). Secondary antibodies: donkey anti-rat Alexa 488, donkey anti-goat, -mouse Alexa 568, donkey anti-rabbit, -guinea pig Alexa 647 (all 1:1000, Invitrogen, Life technologies), donkey anti-rat Cy5, donkey anti-mouse biotinylated (1:1000, Jackson Immuno Research), goat anti-rabbit biotinylated, rabbit anti-rat biotinylated (all 1:500, Vector Labs). Cell nuclei were stained with 4′,6-diamidino-2-phenylindole dihydrochloride at a concentration of 0.5 μg/μl (DAPI; Sigma-Aldrich).
Image documentation and analysis were done using a Zeiss Axioplan light microscope or a confocal scanning laser microscope (Zeiss LSM 700) with LSM Software (ZEN 2012) for fluorescent stainings.
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2

Immunohistochemistry of Amyloid Beta in Hippocampus

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Brains were cut into 10 micron sections using a cryostat. A series of sections through the hippocampus was taken, and the site of injection was located by staining for CD11B; this allowed identification of the antibody-injected brain region to use for further immunohistochemistry. Immunohistochemistry was performed as described before [27 (link)] using CD11B (5C6, 1:500, Serotec), CD68 (FA11, 1:500, Serotec) and Aβ (3D6, 1:1000, in house), FITC sheep anti-mouse F(ab)2 (1:500, Sigma), horse anti-mouse biotinylated (1:250, Vector) and rabbit anti rat biotinylated (1:250, Vector).
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3

Immunohistochemistry of Endothelial and Mesenchymal Markers

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Tissue preparation and immunohistochemistry were performed as previously described (33 (link)). The primary antibodies used were: anti-platelet endothelial cell adhesion molecule-1 (PECAM-1) monoclonal antibody (1:100; BD Pharmingen, San Diego, CA, USA), anti-SMA antibody (1:200; Sigma-Aldrich), anti-EphrinB2 polyclonal antibody (1:1,000), and anti-Snail polyclonal antibody (1:2,000) (both from Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA). Secondary antibodies were biotinylated rabbit anti-rat (1:500) and goat anti-rabbit (1:200) antibodies from Vector Laboratories, Inc., Burlingame, CA, USA. The peroxidase activities were visualized using streptavidin-horseradish peroxidase (HP) and the diaminobenzidine (DAB) detection system (Vector Laboratories, Inc.). The slides were then counterstained with hematoxylin (Surgipath; Leica Microsystems, Wetzlar, Germany).
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4

Immunohistochemical Staining of F4/80 in Tissues

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Spleen and livers were fixed overnight in 4% formalin in PBS and embedded in paraffin using routine procedures. Then, 5 µm sections were deparaffinised with xylene, incubated in 3% H2O2 in methanol for 20 min to block endogenous peroxidase, and subsequently rehydrated using a descending ethanol series. Sections were incubated in 10 mM citrate buffer (pH 6.0) at 37 °C for 2 h and subsequently incubated in 0.075% trypsin (Sigma-Aldrich) in PBS at 37 °C for 7 min. Nonspecific binding was blocked by incubating the sections in 10% normal rabbit serum in PBS for 20 min and subsequently the sections were incubated overnight at 4 °C with an anti F4/80 antibody 1:1000 in PBS, 2% NRbS (Rat anti ms, hu F4/80;BM8 eBioscience). After washing with PBS, the sections were incubated for 30 min at RT with 200 times diluted biotinylated rabbit-anti-rat (Vector laboratories, cat.nr. BA-4001). Finally, an avidin–biotin complex was applied to the sections for 30 min, and they were subsequently incubated with Bright DAB (3,3′-diaminobenzidine) for 8 min at RT. Nuclei were stained by incubating the sections for 5 s with hematoxylin and a subsequent wash with tap water for 10 min. Finally, the sections were dehydrated with, consecutively, water, 50%, 70%, and twice 100% ethanol, and twice with xylene, after which they were mounted with Permount, dried, and imaged.
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