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8 protocols using axioscop 2 plus microscope

1

Microscopic Analysis of Biological Objects

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The cytological preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS, using an Axioscop 2 plus microscope (Zeiss) and objectives with various magnifications (Zeiss), and photographed using an AxioCam HRc camera (Zeiss); the images were analyzed using the AxioVision 4.7 microscopy software (Zeiss). Cell preparations were stained with fluorescent dyes and examined under an LSM 780 laser scanning confocal microscope (Zeiss) using the LSM Image Browser and ZEN 2010 software (Zeiss).
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2

Histological Analysis of Testis Morphology

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The testes of adult males were removed, separated from tunica albuginea and fixed in Bouin’s solution for 48 h, dehydrated in a graded ethanol series, immersed in xylene and finally embedded in paraffin. The testes were sectioned at a thickness of 10 μm and mounted on slides. The sections were deparaffinised, stained with hematoxylin and eosin and examined at low and high magnifications under an Axioscop 2 plus microscope (Carl Zeiss, Jena, Germany) equipped with a CCD camera AxioCam HRc (Carl Zeiss) and AxioVision image-processing package (Carl Zeiss). Only tubules of strictly frontal section were taken into the analysis. The stages of the seminiferous epithelium cycle were determined at the cross-sections of the testis according to Leblond and Clermont [24 (link)] and Wing and Christensen [25 (link)]. The ratios of various cell types of spermatogenic epithelium were estimated in the tubules at stages VI–VIII. Caudal epididymitis was minced in the phosphate buffered saline (PBS) at 37 °C. The sperm morphology was examined at the smear prepared on glass slides. Sperm abnormalities were classified according to Wyrobek and Bruce [26 (link)].
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3

Whole-mount in situ Hybridization Assay

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The pGEM-T-Easy-Pl-galectin-8 plasmid was used as template for the synthesis of Digoxygenin (DIG) labelled antisense and sense RNA probes. Whole-mount in situ hybridization was performed in a 96-well plate (Greiner Labortechnik, Longwood, FL, USA), using 30–40 embryos per well as previously described49 (link). The hybridization reactions were carried out at 62 °C, for at least 20 h. After hybridization, specimens were extensively washed and incubated with an anti-DIG alkaline phosphatase-conjugated antibody (Roche). Immuno-detection was carried out at room temperature with BCIP/NBT chromogenic substrates. Stained embryos were mounted on glass slides and observed under a Zeiss Axioscop 2 plus microscope. Images were captured by a digital camera. Control hybridization reactions with the sense probe did not show any specific signal.
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4

Microscopic Examination of Biological Samples

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The cytological and histological preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS, using an Axioscop 2 plus microscope (Zeiss) and objectives with various magnifications (Zeiss), and photographed using an AxioCam HRc camera (Zeiss); the images were analyzed using the AxioVision 4.7 microscopy software (Zeiss). Cell preparations stained with fluorescent dyes were examined under an LSM 510 or an LSM 780 laser scanning confocal microscope (Zeiss) using the LSM Image Browser and ZEN 2010 software (Zeiss). All cells were counted separately on each cover slip for each patient in each test.
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5

Microscopic Analysis of Mtb Phagocytosis

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The histological sections, cytological and other preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS (Novosibirsk, Russia), using an Axioscop 2 plus microscope (Zeiss) and an LSM 780 laser scanning confocal microscope (Zeiss) as described.[ 111213 ] All human cells and Mtb in human cells were counted separately on each cover glass for each patient and phagocytosis assay. More than 1000 alveolar macrophages were analyzed at each preparation for each patient. Statistical data processing was performed using MS Excel 2007 (Microsoft, Redmond, Washington, USA).
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6

Fluorometric TUNEL Assay for Apoptosis

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The sections of each sample were deparaffinized, washed in PBS followed by fixation in 4% paraformaldehyde. Apoptosis was analyzed by a terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick end labeling (TUNEL) assay using the DeadEnd Fluorometric TUNEL System (Promega, United States). Slides were mounted with Vectashield Antifade mounting medium (Vector Laboratories, Burlingame) to reduce fluorescence fading and examined under the Axioscop 2 plus microscope (Carl Zeiss, Germany) as described above.
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7

Quantification of eNOS and Phosphorylation States

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Immunohistochemical staining intensities of t-eNOS, phospho-eNOS at Ser1177, and phospho-eNOS at Thr495 obtained via the ABC method were quantified by densitometry, as described previously [7 (link)]. Morphometric analysis was performed with a Zeiss Axioscop-2 Plus microscope at ×100 magnification coupled with Image System Analysis, Axiovision Ver. 4.7 (Carl Zeiss). In consecutive sections, the staining intensities for eNOS, Ser1177, and Thr495 were measured in three areas of section-free regions (background gray value) and in three areas of the same blood vessels (blood vessel gray value). Then, the mean of the three measured values was calculated for each background and for each blood vessel. The difference between the mean value of the background and the mean value of the blood vessel gave the mean value for each blood vessel of the healthy and inflamed molars (n = 8 molars from 8 different patients). The values for the blood vessels of the healthy and inflamed pulp sections were analyzed statistically.
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8

Myelinated Fiber Quantification in Optic Nerve Sections

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Semithin (500 nm) cross sections were cut in an RMC ultramicrotome, 1 mm distal to the posterior pole of the eye, collected on gelatin-coated slides, stained with toluidine blue, mounted with Polybed 812 resin, and imaged under an Axioscop 2 Plus microscope (Carl Zeiss). For quantitative analyses, four images at 100× magnification were taken systematically from the cross sections of each nerve. Images of blinded experimental groups were processed with ImageJ software (National Institutes of Health, Bethesda, MD, USA), and the number of myelinated fibers was manually counted by the same person (CAA).
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