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10 protocols using ab1128

1

Propagation and Quantification of RSV

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The laboratory strains RSV B1 (ATCC VR1580) and RSV-A2 (ATCC VR1540) were propagated on HEp-2 cells and quantified on Vero cells by plaque assay using goat anti-RSV serum to stain plaques (AB1128; Chemicon International). The generated RSV NS1-BirA*-Flag and RSV mKate2-BirA*-Flag were propagated on HEp-2 cells, and their infectivity was quantified on A549 cells by plaque assay.
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2

Evaluating RSV Neutralization by VHH/Antibody

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RSV A2 (1 × 107 PFU) was incubated with 1 μM VHH/antibody or 2.5 μM dextran sulfate (MP Biomedicals) for 30 min at room temperature. The mixtures were added to chilled HEp-2 cells and incubated for 2 h at 4 °C. The cells were washed five times with cold PBS with 0.5% BSA (PBS-BSA). Half of the cells were fixed with 2% PFA, stained with goat anti-RSV polyclonal serum (AB1128, Chemicon International) and subsequently with AlexaFluor 488 labelled donkey anti-goat antibody (Invitrogen, 1/600 dilution). After washing, the cells were analysed using a FACSCalibur flow cytometer. The other half of the cells was plated out and incubated at 37 °C in DMEM with 2% FCS. After 48 h, the cells were collected, fixed and analysed as described above.
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3

Andrographolide Modulates Heme Oxygenase-1

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Commercial andrographolide (purity 99.67%) was purchased from APExBIO (N1855, USA), with high-performance liquid chromatography (HPLC) and nuclear magnetic resonance (NMR) quality control. Other reagents included dimethyl sulfoxide (DMSO) (D8371, Solarbio, China), HO-1 inducer hemin (HY-19,424, MCE, China), hemoglobin (HB) (H828504, Macklin, China), iron (II) chloride (FeCl2) (I837006, Macklin, China), and biliverdin (BV) (30,891, Merck, Germany). The primary antibodies included HO-1 (R24541, Zen-Bio, China), RSV (AB1128, Millipore, Germany), interferon regulatory factor 3 (IRF3) (ab68481, Abcam, UK), and GAPDH (60004-1-Ig, Proteintech Group, USA). The secondary antibodies included alkaline phosphatase-conjugated goat anti-mouse antibody (SA00002-1, Proteintech Group, USA), goat anti-rabbit antibody (SA00002-2, Proteintech Group, USA), and donkey anti-goat antibody (SA00002-3, Proteintech Group, USA).
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4

RSV Antibody Staining Optimization

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Slides were fixed with PBS 1 × 0.5% Triton X-100 for 20 min and incubated with Fc Block (supernatant of 2.4G2 cells with 5% heat-inactivated human serum) for an additional 20  min. Cells were stained with 1:500 of goat anti-RSV antibody (Millipore Cat# AB1128, RRID: AB_90477) followed by 1:1000 of secondary rabbit anti-goat IgG (H + L)-HRP (Santa Cruz Biotechnology Cat# sc-2922, RRID: AB_656965) antibody. Antibody dilutions and washes were performed in 1X PBS. Nuclear staining was performed with Hoechst 33342 (ThermoFisher Scientific), and slides were mounted with glycerin for analysis under a fluorescence microscope (Olympus). Images were acquired using CellSens software (Olympus). Fluorescence intensity and quantification were measured using ImageJ.
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5

SARS-CoV-2 Isolation and Titration from Patient Samples

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Nasopharyngeal aspirate samples from 2 patients were diluted in 5 ml of DMEM low glucose containing 1000 µg/mL of gentamycin and inoculated into culture of Vero cells. After 1h incubation at 37 °C for complete viral adsorption, the viral inoculum was removed and added 10 ml of Opti-MEM supplemented with 2% of FBS and 1000 µg/mL of gentamycin into the flask. The culture was kept in an incubator at 37 °C and 5% CO2 until macro-visualization of the viral cytopathic effect on the cells. Cells were harvested, centrifuged and the cell pellet was subjected to freeze-thaw cycles to obtain new viral particles. Afterwards, the viral aliquots were given sucrose cryoprotector and then stored in -80 °C until titration or further analysis. Viral titration was determined by plaque-forming unit (PFU) assay, using anti-RSV antibody (Millipore Cat# AB1128, RRID: AB_90477). The antigenic subgroup was identified by real-time PCR targeting the expression of the following primers and probes: Vi99990014_po (RSV A) and Vi99990015_po (RSV B) (ThermoFisher Scientific Cat# A39420). The viral nomenclature was made based on antigenic subgroup-city of isolation/strain number/year (RSV B-POA10/2018 and RSV A-POA43/2018).
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6

RSV Production and Titer Quantification

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RSV A2 strain (by kind donation of Dr. Fernando Polack, Fundación Infant, Argentina) was produced in Vero cells grown in Opti-MEM medium supplemented with 2% FBS at 37°C under 5% CO2. To assess viral titers Vero cells were infected with RSV in serum-free medium followed by a carboxymethylcellulose plaque assay. Plaque lysis titration were performed using an anti-RSV antibody (Millipore Cat# AB1128, RRID: AB_90477) and viral titers are expressed in plaque forming units (PFU). Virus aliquots were stored at -80°C until the experiment. Mycoplasma-free wild-type, RIGI or IFNAR1 knockout A549 cells generated by CRISPR-Cas9 (ATCC Cat# CCL-185, RRID: CVCL_0023) were cultured in DMEM/F12 medium supplemented with 10% FBS at 37°C under 5% CO2.
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7

Quantifying RSV Infection by Plaque Assay

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A549 and MRC-5 cells, cultured in six-well plates, were pre-treated with acetate at 260 μM for 24 h and then infected with 104 PFU/mL of RSV for 96 h. Cells were harvested, submitted to freeze-thaw and then inoculated onto Vero cell monolayers. Viral PFUs were determined using an anti-RSV (1:1000, #AB1128, Millipore, Billerica, MA, USA) antibody after 4 days.
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8

Immunofluorescent Detection of RSV

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Cells were fixed with PBS 1X 0.5% Triton X-100 for 20 minutes and incubated with Fc Block (supernatant of 2.4G2 cells with 5% heat-inactivated human serum) for an additional 20 minutes. Cells were stained with 1:500 of goat anti-RSV antibody (Millipore Cat# AB1128, RRID: AB_90477) followed by 1:1000 of secondary rabbit anti-goat IgG (H + L)-HRP (Santa Cruz Biotechnology Cat# sc-2922, RRID: AB_656965) antibody. Antibody dilutions and washes were performed in 1X PBS. Nuclear staining was performed with Hoechst 33342 (ThermoFisher Scientific), and slides were mounted with glycerin for analysis under a fluorescence microscope (Olympus). Images were acquired using CellSens software (Olympus). Fluorescence intensity and quantification were measured using ImageJ.
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9

Quantifying RSV Viral Load in Lungs

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The RSV viral load in the lung was accessed by RSV F protein gene expression using the indicated specific primers and probes: forward primer 5’-AACAGATGTAAGCAGCTCCGTTATC-3’, reverse primer 5’-GATTTTTATTGGATGCTGTACATTT-3’, and probe 5’FAM/TGCCATAGCATGACACAATGGCTCCT-TAMRA/-3’. Primer sequences were synthesized and cloned into pUC57 plasmids (GenScript, Piscataway, NJ, USA), to perform a 10-fold dilution to generate a standard curve for viral load calculation. The values obtained from viral copies (based on concentration of the plasmid control) were calculated relative to the weight of the pre-weighed lung portion of 100 mg (copies per gram of lung). To access the replicative RSV particles, the right lungs were homogenized, centrifuged and the supernatant were collected, then inoculated onto Vero cell monolayers. Viral PFUs were determined using an anti-RSV (1:500, Millipore Cat# AB1128, RRID: AB_90477) antibody after 4 days.
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10

Visualizing RSV Infection and Osteopontin

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HEp-2 cells were plated in 8-well chamber slides the day before infection. Cells were mock infected or infected with 1 MOI of RSV strain RSV-L19F. Cells were fixed with cold 4% paraformaldehyde 24 or 48 hpi and stained with a goat polyclonal antibody against RSV (Millipore, ab1128) and a rabbit polyclonal antibody to OPN (ABCAM), followed by indirect immunofluorescence using secondary anti-goat IgG Alexa Fluor-555- and anti-rabbit IgG Alexa Fluor-488-conjugated antibodies. Slides were mounted with 4′, 6-diamidino-2-phenylindole (DAPI) containing anti-fade mounting media (Southern Biotech). A minimum of 10 images at 200X magnification were collected per slide with a DP72 digital camera on a BX51 Olympus fluorescence microscope on the three different fluorescence channels.
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