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8 protocols using penicillin streptomycin 1x

1

OP9 Co-Culture for In Vitro T-Cell Differentiation

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OP9 or OP9-DL1 cells were maintained in culture with MEM-alpha(1X) medium (Gibco) containing 20% FBS, L-Glutamine and penicillin/streptomycin (1X) (Gibco) in a 10 cm tissue culture dish. Cells were passaged at two-day intervals (1:4). Before the day of co-culture 105 cells were plated in a 12 well plate to obtain 70–80% confluency on the next day. 2–5 × 105/ml DN thymocytes were then plated on OP9 or OP9-DL1 cells for in vitro differentiation assays in presence of myeloid (IL-3 10 ng/ml, GMCSF 10 ng/ml, SCF 10 ng/ml) and T-cell specific cytokines (IL7 1 ng/ml and Flt3 ligand 5 ng/ml)25 (link).
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2

Comprehensive Cell Culture Toolkit

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DMEM High Glucose (Gibco), RPMI 1640 (Gibco), Trypsin 0.05% (Gibco), penicillin/streptomycin 1X (Gibco), Glutamine (Gibco), Matrigel (Corning), Polybrene (Santa Cruz Biotechnology), Polyethylenimine (Sigma-Aldrich), BRD2 antibody (Bethyl Laboratories), β-actin (Cell Signaling Technology), Osimertinib (MedchemExpress, Selleck), CID compound (Takara 635088), Doxycycline (Sigma), Alisertib (Selleck), Trametinib (Medko), Dabrafenib (MedchemExpress), Crizotinib (Selleck), AMG510 (Selleck), RSL3(Selleck), NEO2734(Selleck), ARV-771(Selleck), CC90010 (Selleck), ABT-263 (Selleck), Ferrostatin (Selleck), Z-VAD-FMK (Selleck), N-acetylcysteine amide (Sigma).
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3

Mesoderm Differentiation of Stem Cells

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Stem cells were taken off feeder cells with 0.5 mM EDTA (GIBCO) and seeded on gelatine-coated 10 cm plates pre-conditioned with MEF medium over-night and cultured in CDM-PVA supplemented with 12 nM hbFGF (Cell guidance systems, UK) and 10 nM hActivin-A (Source Bioscience, UK). CDM-PVA: 50% IMDM (Invitrogen), 50% advanced DMD-F12 (GIBCO) with 1g/l Poly(vinyl alcohol) PVA (SIGMA), Penicillin/Streptomycin 1x (GIBCO), 1-thioglycerol MTG (SIGMA), Insulin-Transferrin-Selenium 1x (ITS, Life Technologies), Cholesterol 1x (SyntheChol, SIGMA).
As a first step of differentiation, the cells were taken towards the mesoderm germline:
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4

Vemurafenib-resistant SK-MEL-239 Cell Line

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SK-MEL-239 clone C3 cell line was received as a generous gift from Prof. Poulikos I. Poulikakos (Department of Oncological Sciences Icahn School of Medicine at Mount Sinai, New York, USA). The establishment of the cell line clone is described by Poulikakos et al. 2011 [15] . The culturing conditions described in the original publication were used. Briefly, parental SK-MEL-239 cells were cultured in RPMI 1640 medium (Gibco) supplemented with 10% FBS (Gibco), penicillin/streptomycin (1X) (Gibco) and L-glutamine (1x) (Gibco). Resistant SK-MEL-239 clone 3 were cultured in the same media supplemented with 2 µM vemurafenib (PLX4032) (SelleckChem). Cells were cultivated in cell culture incubator (Thermo Scientific) at 37˚C and 5% CO2. Depleted medium was replaced with fresh pre-warmed media every two to three days.
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5

Oxidative Stress Response in GES-1 Cells

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GES-1 cells were donated by Dr. Dawid Kidane-Mulat (Austin, TX, USA) and cultured according to previous publications [31 (link)]. Cells were maintained in high-glucose Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum (FBS) (#SV30160.03, Hyclone-Cytiva, Pasching, Austria) and penicillin/streptomycin (1X) (#15140122, Thermo Fisher Scientific, Canada) at 37 °C in a humidified 5% CO2 incubator. For the oxidative-stress-induced model, the GES-1 cells were treated with different concentrations of hydrogen peroxide (50, 100, 200, and 400 μM) for 3 and 24 h, respectively, at 37 °C. We selected 100 μM H2O2 for 3 h for our subsequent experiments.
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6

Isolation and Culture of Human Chondrocytes

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Human knee joint tissues were obtained from OA patients during total knee arthroplasty as surgical waste under IRB approval of Duke Hospital (n = 6). Human articular cartilage from the tibial plateau and femoral condyle (both lesioned and non-lesioned) was finely diced and digested in pronase 0.1% (weight and volume, w/v, Roche, 10165921001) for 1 h, followed by 0.17% (w/v) type II collagenase (Sigma, C6885) in chondrocyte culture media for 16–18 h yielding a mean (± standard error of mean, SEM) 5.48 ± 1.01 × 106 chondrocytes per gram of human articular cartilage [20 ]. Chondrocyte media contained DMEM/F-12, GlutaMAX™ (Thermo Fisher, 10565018) with 10% heat-inactivated fetal bovine serum (HI FBS, Thermo, 10082147), Penicillin–Streptomycin 1x (Thermo, 15140122), and 50 μg/ml l-ascorbic acid (Sigma-Aldrich, A8960). Isolated chondrocytes were seeded at a density of 200,000 cells/well in 24 well plates. The primary chondrocytes were cultured in a monolayer for 5 days in chondrocyte culture media and transduced with empty vector control, WT CBX4, or the mutant CBX4 in lentiviral constructs.
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7

Culturing Mouse Embryonic Stem Cells and Fibroblasts

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Bruce 4 (C57/B6 Strain) mouse embryonic stem cells (ESCs) and HEK293T were purchased from ATCC. Mouse Embryonic Fibroblasts (MEFs) were isolated as previously described [8 (link)]. Briefly, E13.5 C57BL/6 mouse embryos from 13.5 day-pregnant female mice were placed in (1X) PBS, the head and embryonic internal organs were dissociated from the abdominal cavity, then trypsinized and passed through a 10-ml syringe to produce single-cell suspensions, which were further expanded. MEFs and HEK293T cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) Sigma-Aldrich, Cat. No. D6429) supplemented with 10% heat-inactivated Fetal Bovine Serum (FBS), Penicillin/Streptomycin (100 ug/ml; Thermo Fischer Scientific, Cat. No. 15140122), 2mM GlutaMAX (Gibco #,Cat. No. 35-050-061), and 0.1 mM Non-Essential Amino Acids 100X (Gibco, Cat. No. 11140050), at 37°C and 5% CO2. Bruce4 ESCs were cultured in complete ESC medium [Knock Out MediumDMEM (Gibco, Cat. No. 10829018), 20% ES-tested FBS (Pansera, Cat. No. P30-2602), Penicillin/Streptomycin 1X (Thermo Fischer Scientific, Cat. No. 15140122), GlutaMAX 1X (Gibco, Cat. No. 35-050-061), and Non-Essential Amino Acids 1X (Gibco, Cat. No. 11140050)], with 20 ng/mL mLIF (Santa Cruz Biotechnology, sc-4378).
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8

Differentiation and Mitochondrial Imaging of Human Podocytes

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Human podocytes, previously described (19 (link)), were used in our study. These cells began to differentiate after switching from 33° to 37°C and were fully differentiated 15 d after this switch (19 (link), 20 (link)). Podocytes were cultured in RPMI 1640 medium that was supplemented with 10% fetal calf serum, insulin (10 μg/ml; Sigma-Aldrich, Lyon, France), transferrin (5.5 μg/ml; Sigma-Aldrich), selenium (5 ng/ml; Sigma-Aldrich), and penicillin-streptomycin 1X (100×; Thermo Fisher Scientific, Waltham, MA, USA), with 5 mM glucose from d 0 (day of temperature switch) to d 7 (7 d after temperature switch). We confirmed that podocytes at d 15 expressed nephrin, podocin, and podocalyxin by Western blot. To observe mitochondrial network morphology, MitoTracker Red CMXRos 100 nM (Thermo Fisher Scientific) was added to culture medium and cells were incubated at 37°C for 25 min (21 (link)).
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