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4 protocols using anti abi5

1

Co-immunoprecipitation of ABI5 and ENAP1

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Crude proteins were extracted from ENAP1ox seeds germinated on ½ MS medium with 2 μM ABA for 24h after stratification with Co-IP buffer (50mM Tris–Cl pH 8.0,150mM NaCl, 1mM EDTA, 0.1% Triton X-100, 1mM PMSF and protease inhibitor). anti-ABI5 antibodies were incubated with Dynabeads Protein G (Thermo) for 5h before being applied. Followingly, the anti-ABI5 and Dynabeads Protein G mixture were incubated with the crude protein solution overnight at 4°C. After washing five times, proteins bound on the Dynabeads were collected, and resuspended with 2X protein loading buffer. IP proteins were separated with SDS-PAGE and immunoblotted with anti-ABI5 (Abcam) and anti-HA (Cell Signaling) antibodies to detect ABI5 and ENAP1.
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2

Analyzing Arabidopsis Protein Stability

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Seeds of wild-type Col-0 and OX70-3, which were grown in the same growth chamber and harvested at the same day, were sown on MS medium containing 5 μM ABA and cultivated in a growth chamber under continuous white light for 3 d. After being washed twice with liquid MS medium, the seeds were transferred to fresh liquid MS medium supplemented with or without 50 μM MG132 (Sigma-Aldrich) or 100 μM CHX (Sigma-Aldrich), and harvested at the indicated time points. Subsequently, total proteins were extracted from the samples using SDS lysis buffer (Beyotime) and accurately quantified. After mixing with 5 × SDS-loading buffer, the proteins were boiled for 10 min, isolated on a 10% SDS-PAGE gel, and subsequently transferred to polyvinylidene fluoride (PVDF) membrane and incubated in blocking buffer (20mM Tris-HCl, 150 mM NaCl, 0.05% Tween 20, 5% nonfat milk powder) for 1 h at room temperature, then with 1:2000 anti-ABI5 (Abcam) or 1:1,000 anti-RPN6 (Enzo) for 12 h at 4°C, and followed with HRP-conjugated goat anti-rabbit IgG (Thermo) for 1 h. Finally, the PVDF membrane was overlaid on high-sig ECL western blotting substrate (Tanon) for 5 min and imaged using a CHEMI DOCTMXRS (Bio-rad).
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3

Antibody Sources for Protein Detection

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Anti-Myc, anti-HIS, anti-GFP, and anti-RFP antibodies were purchased from Easy Bio System Inc.; anti-LUC was purchased from Sigma-Aldrich; anti-HA was purchased from CoWin Biosciences; anti-ABI5 was purchased from Abcam; anti-Flag, anti-GST, and anti-MBP antibodies were purchased from ProteinTech; anti-UBP12 was gifted by X. Cui from the Chinese Agricultural Academy of Sciences; and anti-Ub and anti-PYL4 antibodies were generated and purified from the stock of our laboratory.
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4

Chromatin Immunoprecipitation (ChIP) Assay

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ChIP assays were performed as previously described [31 (link)]. Generally, seeds were collected and fixed with 1% formaldehyde. The chromatin was isolated and sonicated to generate DNA fragments with an average size between 300–500bp. Then solubilized chromatin was immunoprecipitated using Protein G Dynabeads (Thermo) and incubated with antibodies [anti-ABI5 (Abcam), anti-GFP (Invitrogen), anti-H3Ac (EMD Millipore), anti-H3K9Ac (EMD Millipore), anti-H3K14Ac (EMD Millipore), anti-H3K18Ac (EMD Millipore) and H3K27Ac (EMD Millipore)]. The co- immunoprecipitated DNA was recovered and analyzed by real-time PCR. All ChIP-qPCR primers used in this paper are listed in Supplemental Table. S1.
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