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3 protocols using digalacturonic acid

1

Pectin Purification and Characterization

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Polygalacturonic acid sodium salt, D-galacturonic acid monohydrate, digalacturonic acid, trigalacturonic acid, citrus pectin (esterification degree of 34% and 90%), apple pectin (esterification degree of 75%), and chromatographic resins were all purchased from Sigma. citrus pectin (esterification of 72%) was kindly donated by CP Kelco (Limeira, SP, Brazil).
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2

Silk-Digalacturonic Acid Conjugation

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The EDA conjugated silk solutions (SF(S)-EDA) of 157 kDa MW SF were carbodiimide coupled with the carboxylic acids of digalacturonic acid (Sigma-Aldrich, St. Louis, MO) in the presence of EDC and NHS (Sigma-Aldrich, St. Louis, MO). Briefly, 2 wt% of the SF(S)-EDA solution was dissolved in 0.1M MES buffer at pH 6. digalacturonic acid (10X) was weighed and pre-dissolved in Ultrapure™ distilled water and added to the SF(S)-EDA solution. The pH was adjusted to 6 by dropwise addition of freshly prepared 1M NaOH solution. EDC (10X) and NHS (10X) were added to the reaction mixture at pH 6. The final MES buffer concentration of the reaction mixture was adjusted to 0.05M by addition of Ultrapure™ distilled water. The reaction was stirred at RT for 18h. After the reaction got over, the reaction solution was filtered in a sterile cell strainer with 40 μm mesh size (Thermo Scientific, Rockford, IL) and dialyzed against DI water for 72h with six water changes (1h, 2h, 4h, 24h, 48h, and 72h). The dialysis was performed with a dialysis tube (3,500 MWCO, Thermo Scientific, Rockford, IL). After dialysis, the solutions were frozen at −80°C overnight followed by lyophilizing for 72h. The lyophilized powders were stored at 4°C until further use.
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3

Characterization of Polysaccharides and Phenolics

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The standards used for determination were: arabinose (99%), xylose (99%), rhamnose monohydrate (99%), galacturonic acid monohydrate (97%), acetic acid (96%), formic acid (99%), gallic acid (97.5%), trolox (97%), digalacturonic acid (85%), trigalacturonic acid (90%) and polygalacturonic acid (90%), purchased from Sigma-Aldrich (Steinheim, Germany); glucose (98%), purchased from Scharlau (Barcelona, Spain); galactose (99%), mannose (99%) and fructose (98%), purchased from Panreac (Barcelona, Spain). For the identification of phenolic compounds, 4-hydroxybenzoic acid (99%), p-coumaric acid (98%), gallic acid (97.5%), salicylic acid (99%), tyrosol (98%), sinapic acid (98%) and caffeic acid (98%) were purchased from Sigma-Aldrich (Steinheim, Germany); ferulic acid (99%) and vanillic acid (97%) were purchased from Sigma-Aldrich-Fluka (Steinheim, Germany).
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