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Protein lysis buffer

Manufactured by Cell Signaling Technology
Sourced in United States

Protein lysis buffer is a solution designed to extract and solubilize proteins from cells or tissues for further analysis. It contains a combination of detergents, salts, and buffers that disrupt cell membranes and denature proteins, allowing for the release and preservation of the target proteins.

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26 protocols using protein lysis buffer

1

Affinity Capture of Protein Interactors

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HCT-8 cells were cultured on a 10cm petri-dish, and cell lysates were collected with protein lysis buffer (Cell Signaling Technology) when cell confluency reaches70%-80%. The biotinylated PRD, TAD or ZF7 peptides were incubated with lysates and then streptavidin magnetic beads (Cell Signaling Technology) were used to pull down biotinylated peptides together with proteins binding to them. Then the beads were washed with lysis buffer thoroughly before loaded with SDS-PAGE protein loading buffer to 4-20% gradient SDS-PAGE gels. The membranes were then probed with different antibodies.
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2

Immunoblot Analysis of Protein Expression

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Immunoblot analysis was performed as we have previously described [9 (link),19 (link),21 (link),42 (link)]. Cells were collected and lysed in protein lysis buffer (Cell Signaling, Danvers, MA, USA) with protein and phosphatase inhibitors (Thermo-Fisher/Pierce, Rockford, IL, USA) and cleared by centrifugation. Protein concentration of the supernatant was quantified and boiled in Laemmli sample buffer for 5 min. Cell lysate (20 µg) was separated on gradient or 10% PAGE gels, transferred to nitrocellulose, and blocked with 5% BSA before overnight incubation with primary antibodies, diluted at 1/1000 at 4 °C, followed by HRP conjugated secondary antibody incubation, diluted 1/2000, for 1 h at room temperature (Supplementary Table S1). An ECL chemiluminescence kit (GE Healthcare/Sigma, St. Louis, MO, USA) was used for visualization on X-ray film, and bands were quantified (as integrated density) using Image J software (NIH, Bethesda, MD, USA).
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3

Western Blot Analysis of Cell Signaling Proteins

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Cells were harvested and resuspended in protein lysis buffer (Cell Signaling Technologies, Inc.). The protein samples were quantified using a Bicinchoninic Acid Protein assay kit (Thermo Fisher Scientific, Inc.) and heated for 5 min at 100°C. Equal amounts of protein (30 µg) were then separated by 10% SDS-PAGE. The decentralized proteins were transferred onto a polyvinylidene difluoride membrane (EMD Millipore, Billerica, MA, USA) and immunoblotted with the appropriate primary antibodies (anti-Skp2, 1:1,000 dilution; anti-p21 and anti-p27, 1:500 dilution) at 4°C overnight. After washing with Tris-buffered saline containing Tween-20, the membrane was probed with secondary antibodies (anti-mouse HRP-linked antibody, 1:5,000; anti-rabbit HRP-linked antibody, 1:5,000) and incubated at room temperature for 1 h. Enhanced chemiluminescence (Thermo Fisher Scientific, Inc.) was then used to detect the expression of the proteins.
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4

Western Blot Analysis of Protein Expression

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Six-well dishes (60 mm diameter) of cells were treated as described in the figure legends, followed by lysis in protein lysis buffer (Cell Signaling Technology, Danvers, MA, USA). Cell lysate was resolved on 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels (Bio-Rad, Hercules, CA, USA) and transferred to nitrocellulose membranes. Samples were normalized to β–actin (1:10,000 dilution, A5316, Sigma-Aldrich, St. Louis, MO, USA) expression and probed with antibodies for VN (1:1000 dilution, GTX103475, GeneTex, Irvine, CA, USA) and CLU (1:1000, A241, Quidel, San Diego, CA, USA). Blots were visualized by horseradish peroxidase-conjugated antibodies (Sigma-Aldrich) and chemiluminescence (Thermo Fisher Scientific).
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5

Quantifying ROS in RVLM Tissue

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In this study, two measurements were performed to detect the ROS production in the RVLM tissue. After RVLM tissue was punched and weighed from the rat which was euthanized (pentobarbital sodium, 300 mg/kg, i.p.), 80 μL Protein Lysis Buffer (Cell Signaling Technology, USA) was added into the test tube and tissue was polished by electric homogenizer and then centrifuging for 20 min. Supernatant was collected for analysis by lucigenin chemiluminescence quantitative kit (Genmed Scientifics Inc., USA, GMS10113.5) and dihydroethidium (DHE). We can complete lucigenin chemiluminescence quantitative detecting according to the instructions. DHE, ROS sensitive fluorescent dye, brain tissues (15 μm thick) were incubated at 37°C with DHE (5 μmol/L) for 30 min. Sections were washed in 0.1 M PBS (3 × 1 min) and then examined by confocal laser scanning microscope (Fuji Film, Japan) and the image was captured at red fluorescence microscope around the RVLM and was evaluated using LAS-AF-Lite software [24 (link)].
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6

Western Blot Analysis of Cell Signaling

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The proteins were extracted from the cells in a protein lysis buffer (Cell Signaling Technology, MA, USA) and subsequently centrifuged at 22,000 g for 5 min at 4°C to remove cellular debris. After boiling for 5 min, the lysate samples were separated by a 12% SDS-PAGE electrophoresis and electrotransferred to a PVDF membrane. The membrane was blocked in TBST containing 5% BSA and incubated with anti-P2X7, P2Y1, P2Y2, P2Y11, VEGFR2, VE-cadherin, PECAM-1, calponin, SMA-α, MYH-11 (1 : 500), or GAPDH antibodies (1 : 5,000) (Santa Cruz Biotechnology, CA, USA) overnight at 4°C. The membranes were washed three times with TBST and incubated with the secondary antibodies (1 : 5,000) (CALBIOCHEM, CA, USA) for 60 min at RT. After washing with TBST, immune-detection was accomplished by using the Luminata Forte Western HRP substrate (Merck Millipore, MA, USA) and images were taken using Bio-Rad Chemidoc system.
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7

Quantitative Western Blot Analysis of Protein Expression

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Total proteins were extracted from brain tissues and cells using protein lysis buffer (Cell Signaling Technologies, Danvers, MA). Equal amounts of protein (30 μg) were mixed with NuPAGE sample buffer (Invitrogen), boiled for 10 minutes at 70°C. Then the samples were separated by sodium NuPAGE 4% to 12% Bis-Tris gel (Invitrogen) and transferred to a nitrocellulose i-blot gel transfer stack (Invitrogen) using i-blot system (Invitrogen). After the membrane had been blocked with Tris-buffered saline containing 5% non-fat dry milk, the membranes were treated with anti-STAT3, anti–phospho-STAT3 (p-STAT3; Cell signaling, 1:1,000), anti–cleaved caspase-3 (Cell signaling, 1:1,000), anti–BCL-XL (Cell signaling, 1:1,000), anti-BCL2 (Abcam, Cambridge, MA, 1:1,000), anti-Interleukin 6 (IL-6; Abcam, 1:1,000), anti-IL6R (Thermo Fisher Scientific, Rockford, IL, USA, 1:1,000), anti-ABCC4 (Cell signaling, 1:1,000), anti-Survivin (Abcam, 1:5,000), and anti–β-actin (Sigma-Aldrich, 1:5,000). The blots were developed with enhanced chemiluminescence reagent (Invitrogen) and were exposed to film. The blot densities of the proteins were normalized to the levels of internal β-actin expression and were represented as the relative intensity values.
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8

Murine Epidermal Extraction for Omics

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Murine epidermis was dissociated from the dermis before isolation of bulk RNA and protein. Time points were selected as to not include the anagen phase of the hair cycle, which compromises the dissociation process. Following euthanasia of 21-day-old mice, the skin was dissected, and the underlying fat pad was removed using a scalpel. The resulting tissue was floated dermis side down in dispase (5 U/ml; Corning) in PBS for 40 min at 37°C. The epidermis was then removed using a scalpel, and for RNA, the epidermis was flash-frozen in TRIzol and stored at −80°C until RNA isolation. RNA was extracted using an RNeasy kit (#74104, QIAGEN) at the same time and date for all mice belonging to a single experimental cohort (i.e., RNA-seq) regardless of the date of murine euthanasia to reduce batch effects and stored at −80°C. For protein, epidermis was placed directly into cold PBS and centrifuged at 4°C for 5 min at 2500 rpm. To the resulting pellet, protein lysis buffer (Cell Signaling Technology) containing a protease inhibitor cocktail was added, and the mixture was homogenized, sonicated, rotated at 4°C for 10 min, and then centrifuged at 4°C at full speed for 10 min. Lysates were quantified using the Bradford assay. Frozen lysates were stored at −80°C.
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9

Western Blot Quantification Protocol

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Immunoblot analysis was performed as we have described previously [8 (link),29 (link),31 (link)]. Cells were collected and lysed in protein lysis buffer (Cell Signaling, Danvers, MA, USA) with protein and phosphatase inhibitors (Thermo-Fisher/Pierce, Rockford, IL, USA) and cleared by centrifugation. Protein concentration of the supernatant was quantified, boiled in laemmli sample buffer for 5 min. Cell lysate (20ug) was separated on gradient or 10% PAGE gels, transferred to nitrocellulose, and blocked with 5% BSA before overnight incubation with primary antibodies, diluted 1/1000 at 4 degrees C, followed by HRP conjugated secondary antibody incubation, diluted 1/2000, for 1 h at room temperature (Supplementary Table S1). An ECL chemiluminescence kit (GE Healthcare/Sigma, St. Louis, MO, USA) was used for visualization on X-ray film, and bands were quantified (as integrated density) using ImageJ software (NIH, Bethesda, MD, USA).
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10

Western Blot Analysis of Kidney Proteins

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Protein from kidney tissues was extracted by using the protein lysis buffer(Cell Signaling,Danvers, MA, USA) and then quantified by the Bradford assay (Bio-Rad, USA) . An equal amount of protein was separated on SDS-polyacrylamide gels and transferred onto nitrocellulose membranes (Amersham Biosciences, USA). After blocking non-specific binding with 5% skim milk in TBST for 1 h at room temperature, membranes were then incubated overnight at 4 °C with the primary antibody against Flna (Cell Signaling, Danvers, MA, USA), Col. III and Col. I (Southernbiotech, USA), Trem1 and Pvalb (boster,Wuhan, China), β-actin(Santa Cruz, USA), followed by horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature. The ratio for the protein examined was normalized against β-actin and was expressed as the mean ± SD.
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