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Accell non targeting pool

Manufactured by Horizon Discovery
Sourced in United States

The Accell Non-targeting Pool is a set of siRNA duplexes designed for use as a control in RNA interference (RNAi) experiments. The pool contains a mixture of siRNA sequences that do not target any known gene in the human, mouse, or rat genome, providing a negative control for off-target effects.

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6 protocols using accell non targeting pool

1

siRNA-Mediated Stat5a Knockdown

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The following siRNAs were used in this study: Accell Mouse Stat5a (20850) siRNA-SMART pool (Dharmacon, Cambridge, UK) and Accell Non-targeting Pool (Dharmacon). Transfection was performed by following the manufacture’s instruction. Briefly, isolated cells were incubated with 1 μM Accell siRNA in Accell siRNA Delivery Media (Dharmacon) at 37 °C, 5% CO2 for 48 hr. Knockdown was assessed by Western blotting.
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2

Downregulation of Mcu in T cells

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For downregulation of Mcu, 1 × 106 Tregs or Tcons were transfected with 1 μM siRNA-targeting Mcu (Accell Mouse Mcu siRNA-SMARTpool, E-062849-00-0010, Dharmacon, Lafayette, CO, USA) or non-silencing control RNA (Accell Non-targeting Pool, D-001910-10-20, Dharmacon, Lafayette, CO, USA) using P3 Primary Cell 4D-NucleofactorTM Kit (Lonza, Basel, Switzerland) according to manufacturer’s instructions. Tcons were cultured in medium containing 20 ng/mL IL-2 after transfection, and 24 h later, 1 mg/mL PHA-P was included within to improve cell survival. Tregs were cultured in maintenance medium containing 50 ng/mL IL-2, 5 ng/mL TGF-β, and mouse T activator CD3/CD28 Dynabeads at a ratio of 1:10 (beads:cells). Experiments were performed 72 h after transfection.
To monitor the effect of downregulation of Mcu on mitochondrial Ca2+ uptake, EG7 or EL4 cells were transfected with 1 µM siRNA-targeting Mcu using SF Cell Line 4D-NucleofectorTM Kit (Lonza, Basel, Switzerland) according to manufacturer’s instructions. The mitochondrial Ca2+ indicator mtCEPIA3 was transduced as described in 4.9. Measurements were performed 48 h after transfection.
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3

Silencing VISTA in MDSCs

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SMART-pool Accell VISTA siRNA, Accell Non-targeting Pool and Accell siRNA delivery media were obtained from GE Dharmacon RNA Technologies (GE Dharmacon, Lafayette, CO, USA). Transfection of MDSCs with siRNA was performed according to the manufacturer’s instruction. These siRNAs were transfected at a final concentration of 2 μM in a 96-well tissue culture plate with Accell delivery media for 72 hours. VISTA expression on MDSCs was measured by flow cytometry.
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4

CD73 siRNA Functional Assay

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SMARTpool Accell CD73 siRNA, Accell Non-targeting Pool, and Accell siRNA delivery media were purchased from GE Dharmacon (Lafayette, CO, USA). Control and specific siRNAs were transfected in a 96-well tissue culture plate at a final concentration of 2 μM with Accell siRNA delivery media for 72 h. Cells were then stimulated with anti-CD3/CD28 antibodies for 5.5 h for cytokine functional assay, measured by flow cytometry.
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5

GRN siRNA Knockdown in Glial Neurons

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The Accell Human GRN siRNA SMARTpool (E-009285-00-0050) and Accell Non-targeting Pool (D-001910-10-50) were purchased from Dharmacon. The target sequences of the GRN SMARTpool are GUGCUGUGUUAUGGUCGAU, GAGAUGUCCCCUGUGAUAA, UUGUCCAGCUCGGUCAUGU, and GUGCGUUUCAAUAAAGUUU. The target sequences of the Non-targeting Pool are UGGUUUACAUGUCGACUAA, UGGUUUACAUGUUUUCUGA, UGGUUUACAUGUUUUCCUA, and UGGUUUACAUGUUGUGUGA. The siRNA was reconstituted to 100 μM with 1× Dharmacon siRNA Buffer (B-002000-UB-100) and added directly to the GN media immediately before use. All experiments using siRNA were done with 70,000 GNs per well in 96-well plates. The first 50% media change on the day in vitro (DIV) three was done with 2× concentrated siRNA to achieve the desired concentration of siRNA in each well. All subsequent 50% of media changes were done with freshly added 1× siRNA to maintain the desired siRNA concentration during the culture.
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6

Inducing MSC Secretome via RAB27B Knockdown

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RAB27B siRNA (Accell Smart pool, E-004228-00-0005, Dharmacon) was used for gene knockdown in MSC according to the manufacturer’s instructions. Non-targeting siRNA (Accell Non-targeting Pool, D-001910-10, Dharmacon) were used for siRNA control. Briefly, 5 × 103 MSC were seeded in each well of a 96-well plate with complete medium overnight prior to incubation with 100 μL of each siRNA mixture (1 μM) diluted in EV collection medium. After 24 h, the supernatant was discarded, and the cells were washed with PBS before incubation with EV collection medium with or without IFN-γ (10 ng/mL) and TNF-α (15 ng/mL) for 72 h.
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