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14 protocols using g1212

1

Quantifying Ki-67 Expression in Paraffin-Embedded Tissues

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Paraffin-embedded tissue samples were cut into 4-µm sections and dewaxed for IHC staining. The slides were then incubated with primary antibody Ki-67 (GB111499, Servicebio, Wuhan, China,1:1000) flat in a wet box overnight at 4 °C, and then incubated with secondary antibody(GB23303,Servicebio, Wuhan, China,1:200) for 50 min at 20 °C. After washing, freshly prepared DAB chromogenic solution (G1212, Servicebio, Wuhan, China) was added dropwise to the slides, and the color development time was controlled under the microscope. Then, the slides were restained with hematoxylin (G1004, Servicebio, Wuhan, China). Finally, the films were dehydrated and sealed.The results were interpreted under a white light microscope. Positive Ki-67 staining was assessed using an IHC score, which was calculated as follows: IHC score = percentage score × intensity score. The percentage of positive cells was divided into five classes (percentage score): (i) 0, < 10%; (ii) 1, 10–25%; (iii) 2, 25–50%; (iv) 3, 50–75%; and (v) 4, > 75%. In addition, the staining intensity was divided into four classes (intensity scores): (i) 0, no staining; (ii) 1, light brown; (iii) 2, brown; and (iv) 3, dark brown.
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2

Immunohistochemical Analysis of Liver Tissue

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Paraffin sections of liver were deparaffinized with a deparaffinizing solution (G1128; Servicebio, Wuhan, China), rehydrated with different concentrations of alcohol, and washed in PBS (G0002; Servicebio, Wuhan, China) three times. The sections were incubated in 3% H2O2 solution at room temperature for 25 min in dark conditions to block endogenous peroxidase, blocked with a rapid closure solution at room temperature for 30 min, and finally sequentially incubated with primary antibodies at 4 °C overnight and secondary antibodies at room temperature for 50 min. Sections were developed using diaminobenzidine color-developing solution (G1212; Servicebio, Wuhan, China) and re-stained with hematoxylin (G1004; Servicebio, Wuhan, China). Sections were observed and photographed using a light microscope (Nikon E100; Nikon Corporation, Tokyo, Japan). Information on all the antibodies is shown in Table S2.
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3

Nerve Degeneration Detection Technique

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The slice preparations were followed by previously described. One slice from each segment was stained with Masson’s trichrome to locate the ablation sites. Tyrosine hydroxylase (TH), neuronal nitric oxide synthase (nNOS) and calcitonin gene-related peptide (CGRP) were used to detect the efferent sympathetic, parasympathetic and afferent sensory nerves.
After dewaxing, gradient hydrating, antigen retrieval and endogenous peroxidase removal, the serial slices were homologous serum (AR1009, BOSTER, used at 10%; SL050, Solarbio, Beijing, China, used at 10%) blocked and then incubated overnight at 4 °C with TH polyclonal antibody (AB117112, Abcam, used at 1:500), monoclonal anti-CGRP (C7113, Sigma, used at 1:200) and nNOS (AB1376, Abcam, used at 1:200), respectively; then, they were incubated with the corresponding secondary antibodies (PV-6000, PV-9000, Origene; A0181, Beyotime) at 37 °C for 30 min. DAB solution (G1212, Servicebio Technology, Wuhan, China) and hematoxylin dye (G1004, Servicebio Technology, Wuhan, China) were used successively for chromogenic reaction and staining. A fluorescence microscope (OLYMPUS, BX53, Japan) was used for imaging. Absent or low expression indicated that the nerves were completely or partially destroyed.
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4

TUNEL Apoptosis Assay in Gastric Tissue

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TUNEL apoptosis assay was carried out according to the manufacturer’s instructions (Servicebio, No. G1507). Four micrometre-thick sections, sliced from paraffin-embedded gastric tissues, were routinely dewaxed and rehydrated. The sections were incubated with proteinase K working solution at 37 °C for 20 min, followed by incubation with labeling buffer containing Terminal deoxynucleotidyl Transferase (TdT) and digoxin labeled deoxyuridine triphosphate (dUTP). Next, samples were exposed to Reagent Streptavidin-HRP and TBST. Finally, staining with 3, 3′-diaminobenzidine (DAB) solution (Servicebio, No. G1212) and counterstaining with hematoxylin. Apoptotic cells were shown as nuclear staining. Counting for apoptotic cells was performed using light microscopy with magnification of × 400. Three randomly selected fields were captured for each section, in which apoptosis index was calculated.
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5

Histological Analysis of Ferroptosis in Tumor Tissues

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Tumor tissues were fixed in 4% paraformaldehyde following dried and embedded in paraffin. Next, tissues were cut into 4 μm sections and deparaffinized for standard hematoxylin and eosin (HE) staining and Prussian blue staining, or deparaffinized and rehydrated for standard immunohistochemical (IHC) staining. IHC staining of ferroptosis thereof were conducted using antibodies of FTH1 (sc-376594, Santa Cruz Biotechnology) at 4 ℃ overnight, following by the second antibody (G1214, Servicebio) at 25 ℃ for 1.5 h and then stained by DAB (G1212, Servicebio) and hematoxylin. Sections were observed using an Olympus microscope (Olympus, Japan).
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6

TUNEL Apoptosis Assay in Gastric Tissue

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TUNEL apoptosis assay was carried out according to the manufacturer’s instructions (Servicebio, No. G1507). Four micrometre-thick sections, sliced from paraffin-embedded gastric tissues, were routinely dewaxed and rehydrated. The sections were incubated with proteinase K working solution at 37 °C for 20 min, followed by incubation with labeling buffer containing Terminal deoxynucleotidyl Transferase (TdT) and digoxin labeled deoxyuridine triphosphate (dUTP). Next, samples were exposed to Reagent Streptavidin-HRP and TBST. Finally, staining with 3, 3′-diaminobenzidine (DAB) solution (Servicebio, No. G1212) and counterstaining with hematoxylin. Apoptotic cells were shown as nuclear staining. Counting for apoptotic cells was performed using light microscopy with magnification of × 400. Three randomly selected fields were captured for each section, in which apoptosis index was calculated.
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7

IHC Analysis of Ki-67 and CD155

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For immunohistochemistry (IHC) analysis, paraffin sections (4 μm) were first dewaxed and rehydrated. Tissue slides were then subjected to antigen-retrieved in a citrate buffer (10 mM sodium citrate, 0.05% Tween 20, pH 6.0) for 15 min. For Ki-67 and CD155 detection, sections were incubated with antibodies against Ki-67 (1:200, Servicebio, China, catalog #GB13030-2) and CD155 (1:300, Abcam, UK, catalog #ab233102) respectively at 4°C overnight. The sections were then washed and subsequent incubated with horseradish peroxidase (HRP)–conjugated Goat anti-Rabbit IgG (1:200, Servicebio, China, catalog #GB23303) for 45 min at room temperature. The subsequent detection was performed using the standard substrate detection of DAB (Servicebio, China, catalog #G1212).
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8

Histological Staining and Immunohistochemistry Protocols

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For hematoxylin and eosin (H&E) staining (G1005, Servicebio), tissues were fixed by 10% neutral formalin for 1 day, dehydrated and embedded in paraffin, and then cut into 5-µm-thick sections. After being dewaxed and treated with gradient alcohol, the sections were stained with hematoxylin for 5 min at room temperature and were washed with running water. Subsequently, alcohol solution with 1% hydrochloric acid and ammonia was employed. Subsequently, 1% eosin was utilized for further staining for 3 min at room temperature, gradient ethanol for section dehydration, and neutral balsam for section mounting, followed by microscope visualization (Nikon Eclipse E100; Nikon Corporation).
For IHC, the specimens were cut into sections (5-µm-thick). All tissue samples were fixed with 10% neutral formalin and embedded in paraffin. Paraffin sections were dewaxed and the endogenous peroxides quenched with 0.3% hydrogen peroxide. They were then incubated with anti-ENC1 antibody (1:200, ab124902; Abcam) overnight (at 4°C) and secondary antibody (1:200, 7074S; Cell Signaling Technology, Inc.) for 30 min (at 37°C). The sections were stained with diaminobenzidine (G1212; Servicebio). Images were collected under a microscope (Nikon Eclipse E100; Nikon Corporation).
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9

Quantification of MHC I and II expression

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As described above, the FFPE sections were deparaffinized and hydrated, and antigens were retrieved with Tris-EDTA buffer. Endogenous peroxidase activity was quenched with 3% H2O2. After blocking with goat serum, the slides were incubated with primary antibodies [major histocompatibility complex (MHC) I, ab134189/Abcam, 1:2000 or MHC II, ab170867/Abcam, 1:300], followed by incubation with HRP-conjugated secondary antibodies (AntGene, ANT020). Immunoperoxidase staining was performed using the 3,3′-diaminobenzidine (DAB) system (Servicebio, G1212). Finally, the slides were counterstained with hematoxylin and coverslipped with a mounting solution. The results were recorded using a TEKSQRAY scanner (SQS-40R) and quantified by three pathologists. The staining score was calculated as the area score × intensity score. Area scores were graded as 0–25% (1), 26–50% (2), 51–75% (3), and 76–100% (4); intensity scores were graded as negative (0), weakly positive (1), positive (2), and strongly positive (3).
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10

Immunohistochemical Analysis of Inflammatory Markers

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The Elivision Super HRP IHC Kit (KIT99-22, MXB, China) was used for immunohistochemistry according to the manufacturer’s instructions. Pancreatic sections were deparaffinized and rehydrated, and citrate buffer (pH 6.0, G1202, Servicebio, China) was used for antigen retrieval. Peroxidase blocking was performed in PBS with 3% H2O2 for 10 min, and permeabilization was conducted using 0.2% Triton X-100 (93443, Sigma–Aldrich, U.S.A.) for 45 min at room temperature. The slides were incubated with primary antibodies against IL-1β (1:200, GB11113, Servicebio), nuclear factor κ-B p65 (NF-κB p65) (1:200, GB11042, Servicebio), and Rbpj (1:200, 5313T, Cell Signaling Technology) overnight at 4°C. The slides were incubated with a response enhancer at 37°C for 20 min HRP-conjugated secondary antibody at 37°C for 20 min. AEC (ZLI-0936, ZSGB-Bio, China) or DAB (G1212, Servicebio, China) substrates were used for color development. Five sections in each group and ten 400× images per section were evaluated by calculating the number of positive cells/total number of cells.
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