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11 protocols using microscope image system

1

Immunohistochemical Staining Protocol

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Immunohistochemical staining was done on cells. At first, the slides were blocked with 5% normal serum, and then the primary antibodies were incubated with the slides overnight. After washing three times, slides were incubated with the secondary antibodies and ABC solution using the ABC kit (Vector Laboratories). Slides were then stained with a diaminobenzidine solution. Nuclei were stained by hematoxylin. The images from these slides were analyzed by NIS Element software (Nikon Instruments, Melville, NY) in the Nikon microscope image system (Nikon Instruments).
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Immunohistochemical Staining of Paraffin Sections

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Immunohistochemical staining was performed on paraffin sections. Antigen retrieval was performed with antigen unmasking solution (Vector Laboratories). Endogenous peroxidase activity was quenched with 3% H2O2. After blocked with 5% normal serum, the slides were incubated with primary antibodies in a humidified chamber overnight. The next day, the slides were incubated with appropriate secondary antibodies and ABC solution using ABC Elite kit (Vector Laboratories). The immunoreactivity was revealed by incubating the slides in DAB solution. Nuclear staining was performed using hematoxylin. The slides were dehydrated, cleared, and mounted. The images were acquired and analyzed by NIS Element software with Nikon microscope image system (Nikon Instruments).
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Immunohistochemistry of Kidney Tissues

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Immunohistochemistry was carried out on paraffin-embedded kidney sections [15 (link)]. Antigen unmasking solution (Vector Laboratories, Burlingame, CA, USA) was used to retrieve the antigen after fixation. Three percent H2O2 was used to block endogenous peroxidase activity before blocking. After incubation with 5% normal serum, slides were incubated with primary antibodies in a humidified chamber overnight. After washing, kidney sections were incubated with secondary antibodies, followed by ABC solution as previously reported [16 (link)]. Diaminobenzidine solution was applied to visualize the secondary antibody conjugated with horseradish peroxidase (HRP). Red substrate was used to visualize the secondary antibody conjugated with alkaline phosphatase (AP). Hematoxylin was used for nuclear staining. The sections were dehydrated with ethanol, cleared with histoclear, and mounted with mounting medium. NIS Element software (Nikon Instruments, Melville, NY, USA) with Nikon microscope image system (Nikon Instruments) were utilized to quantify the protein expression levels in the kidney.
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Immunohistochemical Analysis of Kidney Samples

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Immunohistochemical staining was performed on paraffin sections as described36 ,37 (link). After antigen retrieval, endogenous peroxidase activity was quenched with 3% hydrogen peroxide. The kidney sections were incubated with primary antibodies, appropriate secondary antibodies and ABC solution sequentially as described9 (link). Immunoreactivity was detected with diaminobenzidine. Sections were counterstained with hematoxylin and mounted using histomount. A Nikon microscope image system (Nikon Instruments, Melville, NY) was used to capture the images and analyzed using a NIS Element software (Nikon Instruments, Melville, NY) in a blinded fashion by one observer4 (link),6 (link).
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5

Immunofluorescence Staining of Kidney Sections

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Immunofluorescence staining of kidney sections was performed on paraffin sections as described 15 (link), 51 (link), 52 (link), 57 (link). After antigen retrieval, nonspecific binding was blocked with protein block (Dako, Carpinteria, CA). Kidney sections were incubated with primary antibodies overnight, followed by appropriate Alexa Fluor 488- or 594-conjugated secondary antibodies (Life Technologies). Cell staining was performed according to the Immunocytochemistry (ICC) protocol 58 (link). Cells were grown on glass coverslips. After washing with PBS, the samples were fixed in 4% paraformaldehyde (Alfa Aesar, Ward Hill, MA), and permeabilized with 0.5% Triton X-100 in PBS. Cells were stained with anti-MRTF-A (Santa Cruz Biotechnology), followed by Alexa Fluor 594-conjugated secondary antibody. Alexa Fluor 488 conjugated Phalloidin (Cell Signaling Technology) was used to stain F-actin. Slides were mounted with medium containing DAPI (Vector Laboratories). Fluorescence intensity was visualized using a Nikon microscope image system. Quantitative analysis of sections was performed using NIS-Elements Br 3.0 software.
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6

Immunohistochemical Staining Protocol for Paraffin Sections

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Immunohistochemical staining was performed on paraffin sections. Antigen retrieval was performed with antigen unmasking solution (Vector Laboratories, Burlingame, CA) or proteinase K. Endogenous peroxidase activity was quenched with 3% H2O2 for 10 min. After blocking with 5% normal serum, sections were incubated with primary antibodies in a humidified chamber overnight. After washing, sections were incubated with appropriate secondary antibodies and ABC solution sequentially according to the instruction (Vector Laboratories). Immunoreactivity was then visualized by incubating sections in diaminobenzidine solution for an appropriate period of time. Nuclear staining was performed with hematoxylin. The slides were dehydrated, cleared, and mounted. The images from these slides were obtained and analyzed by NIS Element software (Nikon Instruments, Melville, NY) with Nikon microscope image system (Nikon Instruments)10 (link)12 (link).
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7

Immunohistochemical Staining Protocol

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Immunohistochemical staining was performed on paraffin sections. Antigen retrieval was performed with antigen unmasking solution (Vector Laboratories) or proteinase K. Endogenous peroxidase activity was quenched with 3% H2O2 for 10 min. After blocking with 5% normal serum, slides were incubated with primary antibodies in a humidified chamber overnight. After washing, slides were incubated with appropriate secondary antibodies and ABC solution sequentially according to the ABC kit (Vector Laboratories). Slides were then visualized by incubation in diaminobenzidine solution for an appropriate period of time. Nuclear staining was performed with hematoxylin. The slides were dehydrated, cleared, and mounted. The images from these slides were obtained and analyzed by NIS Element software (Nikon Instruments) with Nikon microscope image system (Nikon Instruments).
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8

Immunohistochemical Staining Protocol

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Immunohistochemical staining was performed on paraffin sections. Antigen retrieval was performed with antigen unmasking solution (Vector Laboratories) or proteinase K. Endogenous peroxidase activity was quenched with 3% H2O2 for 10 min. After blocking with 5% normal serum, slides were incubated with primary antibodies in a humidified chamber overnight. After washing, slides were incubated with appropriate secondary antibodies and ABC solution sequentially according to the ABC kit (Vector Laboratories). Slides were then visualized by incubation in diaminobenzidine solution for an appropriate period of time. Nuclear staining was performed with hematoxylin. The slides were dehydrated, cleared, and mounted. The images from these slides were obtained and analyzed by NIS Element software (Nikon Instruments) with Nikon microscope image system (Nikon Instruments).
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9

Immunohistochemical Staining Protocol

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Immunohistochemical staining was performed on paraffin sections. Antigen retrieval was performed with antigen unmasking solution (Vector Laboratories) or proteinase K. Endogenous peroxidase activity was quenched with 3% H2O2 for 10 min. After blocking with 5% normal serum, slides were incubated with primary antibodies in a humidified chamber overnight. After washing, slides were incubated with appropriate secondary antibodies and ABC solution sequentially according to the ABC kit (Vector Laboratories). Slides were then visualized by incubation in diaminobenzidine solution for an appropriate duration of time. Nuclear staining was performed with hematoxylin. The slides were dehydrated, cleared, and mounted. The images from these slides were obtained and analyzed by NIS Element software (Nikon Instruments) with the Nikon microscope image system (Nikon Instruments).
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10

Immunohistochemical Staining Protocol

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Immunohistochemical staining was performed on paraffin sections. Antigen retrieval was performed with antigen unmasking solution (Vector Laboratories) or proteinase K. Endogenous peroxidase activity was quenched with 3% H2O2 for 10 min. After blocking with 5% normal serum, slides were incubated with primary antibodies in a humidified chamber overnight. After washing, slides were sequentially incubated with appropriate secondary antibodies and ABC solution according to the ABC kit (Vector Laboratories). Slides were then visualized by incubation in diaminobenzidine solution for an appropriate time duration. Nuclear staining was performed with hematoxylin. The slides were dehydrated, cleared, and mounted. The images from these slides were obtained and analyzed using the NIS Element software (Nikon Instruments) with a Nikon microscope image system (Nikon Instruments).
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