The largest database of trusted experimental protocols

True nuclear transcription buffer set

Manufactured by BioLegend
Sourced in United States

The True-Nuclear Transcription buffer set is a collection of solutions designed for the extraction and analysis of nuclear transcription factors. The set includes reagents for cell lysis, nuclear extraction, and transcription factor binding. These components facilitate the isolation and measurement of transcription factors from cellular samples.

Automatically generated - may contain errors

7 protocols using true nuclear transcription buffer set

1

Tumor and Splenocyte Isolation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Weighted tumors were cut into pieces and digested in a mixture comprising collagenase IV (1 mg mL–1), hyaluronidase (0.4 mg mL–1), DNase I (0.1 mg mL–1), and bovine serum albumin (10 mg mL–1) in RPMI‐1640 medium at 37 °C under constant shaking for 30 min. Debris was removed by filtration through a 40 µm mesh. After lysing red blood cells, the cell mixture was washed and resuspended in PBS supplemented with 2% FBS for further analyses.
Spleens were minced, filtered through 40 µm meshes, and subjected to red blood cell lysis to obtain suspension of splenocytes. The splenocytes or digested tumors were stained with Zombie NIRTM Fixable Viability Kit (Biolegend, USA), blocked with antimouse CD16/32, and then stained with the antibodies listed in Table S3, Supporting Information. Intracellular staining was performed after fixation and permeabilization with a Biolegend True‐Nuclear Transcription Buffer Set. Samples were analyzed on a BD FACSVerse 3L8C cytometer (San Jose, CA, USA). Data were processed with FlowJo software V10 (BD Biosciences, San Jose, CA, USA).
+ Open protocol
+ Expand
2

Maternal Immune Activation Impacts Fetal HSPCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
8-12-week-old female C57BL/6 females were mated to C57BL/6 male mice and treated with 20mg/kg pIC or saline at E14.5. Females were sacrificed 2hrs later and FLs were harvested from embryos and processed as described above and. Cells were then stained using an HSPC antibody cocktail before being fixed and permeabilized with the True-Nuclear Transcription buffer set (Biolegend) and stained with TLR3-APC (Biolegend).
For TLR3 KO experiments, TLR3KO/KO female mice (RRID:IMSR_JAX:005,217) were mated to C57BL/6 males and treated with 20mg/kg pIC or saline at E14.5. Litters were aged to postnatal day (P)14, genotyped and sacrificed for BM HSPC analysis. Flow cytometric analysis was performed using an Aurora Spectral Analyzer (Cytek).
+ Open protocol
+ Expand
3

Fetal Liver Hematopoietic Stem Cell Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fetal liver cells were processed into a single‐cell suspension and cKit‐enriched using CD117 MicroBeads (Miltenyi Biotec, San Diego, CA, USA). The cKit‐enriched population was stained with an antibody cocktail for surface markers of hematopoietic stem and progenitor cells. Cells were then fixed and permeabilized with the True‐Nuclear Transcription buffer set (Biolegend) and then stained with Ki67‐APC (Invitrogen, Carlsbad, CA, USA) and Hoescht 33,342 (Invitrogen).
+ Open protocol
+ Expand
4

Isolating Fetal Liver Hematopoietic Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fetal liver cells were processed into a single cell suspension and cKit-enriched using CD117 MicroBeads (Miltenyi Biotec, San Diego, CA, USA). The cKit-enriched population was stained with an antibody cocktail for surface markers of hematopoietic stem and progenitor cells. Cells were then fixed and permeabilized with the True-Nuclear Transcription buffer set (Biolegend) and then stained with Ki67-APC (Invitrogen, Carlsbad, CA, USA) and Hoescht 33,342 (Invitrogen).
+ Open protocol
+ Expand
5

Intracellular Cytokine Profiling in Splenocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Intracellular cytokine measurements were performed with a second flow cytometric panel (Panel 2) of stimulated cells, as described previously [34 (link)]. In brief, the single cell suspensions of 2×106 splenocytes were stimulated with 1 μg/mL of the peptide NP396, NP205LCMV or NP38 in the presence of Brefeldin A (GolgiPlug, BD Bioscience) for 4.5 h at 37 °C and 5 % CO2. As controls, splenocytes were incubated with α-CD3 antibody (145-2C11; eBioscience) or with media. Cells were used for flow cytometric staining as described in 2.4. with CD8 and CD44 as surface marker stainings and intracellular cytokine staining for IFNγ and TNFα (Biolegend, Supplementary Table S1) were performed after permeabilization with the True-Nuclear transcription buffer set (Biolegend) according to the manufacturer’s protocol. Flow cytometric measurement was performed with the LSRFortessa (BD Bioscience; 3 lasers and 14 colors) and analyzed with the FlowJo_V10 software (BD Bioscience). Pre-gating was done as described in 2.4. and a detailed gating strategy is shown in Supplementary Figure S2.
+ Open protocol
+ Expand
6

Maternal Immune Activation Impacts Fetal HSPCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
8-12-week-old female C57BL/6 females were mated to C57BL/6 male mice and treated with 20mg/kg pIC or saline at E14.5. Females were sacrificed 2hrs later and FLs were harvested from embryos and processed as described above and. Cells were then stained using an HSPC antibody cocktail before being fixed and permeabilized with the True-Nuclear Transcription buffer set (Biolegend) and stained with TLR3-APC (Biolegend).
For TLR3 KO experiments, TLR3KO/KO female mice (RRID:IMSR_JAX:005,217) were mated to C57BL/6 males and treated with 20mg/kg pIC or saline at E14.5. Litters were aged to postnatal day (P)14, genotyped and sacrificed for BM HSPC analysis. Flow cytometric analysis was performed using an Aurora Spectral Analyzer (Cytek).
+ Open protocol
+ Expand
7

Isolating Fetal Liver Hematopoietic Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fetal liver cells were processed into a single cell suspension and cKit-enriched using CD117 MicroBeads (Miltenyi Biotec, San Diego, CA, USA). The cKit-enriched population was stained with an antibody cocktail for surface markers of hematopoietic stem and progenitor cells. Cells were then fixed and permeabilized with the True-Nuclear Transcription buffer set (Biolegend) and then stained with Ki67-APC (Invitrogen, Carlsbad, CA, USA) and Hoescht 33,342 (Invitrogen).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!