The largest database of trusted experimental protocols

65 protocols using takara rna pcr kit

1

Overexpression of B7-H3 in Mammalian Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cDNA fragment encoding B7-H3 was isolated with Takara RNA PCR kit (Takara, Japan) using total RNAs. PCR products were cloned into pcDNA3.1 (+) (Invitrogen, Carlsbad, CA). Cells were transfected with plasmid encoding B7-H3 using Lipofectamine 2000 (Invitrogen) according to the manufacturer's protocol. The transfection medium (Opti-MEM; Gibco) was replaced with complete medium 12 h after transfection, and the cells were incubated for the indicated times.
Total RNAs were isolated from tissues or cells by TRIzol reagent, and reverse transcriptions were performed by Takara RNA PCR kit (Takara, Japan) according to the manufacturer's instructions. In order to quantify the transcripts of the interest genes, real-time PCR was performed using a SYBR Green Premix Ex Taq ((Takara, Tokyo, Japan) on ABI 7500 system (Applied Biosystems, Foster, CA, USA) with GAPDH used as the endogenous control.
+ Open protocol
+ Expand
2

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from tissue samples or cells by using an RNeasy Mini kit (Qiagen). cDNA was synthesized with multiscribe reverse transcriptase, and qPCR was performed using a Takara RNA PCR kit (Takara Bio) and the QuantiTect SYBR Green PCR Kit (Qiagen) as previously described42 (link),43 (link).
+ Open protocol
+ Expand
3

Quantification of miRNA Expression by qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total miRNAs were isolated using mirVana miRNA Isolation Kit (Ambion, Austin, TX, USA), followed by reverse transcriptions using Takara RNA PCR kit (Takara Biotechnology, Dalian, China). To quantify the transcriptional levels of the certain genes, real-time PCR was performed using a SYBR Green Premix Ex Taq (Takara, Dalian, China) according to the product specification. Relative expression levels of the miRNA were normalized to that of RNU6, which was routinely used as an internal or endogenous control for miRNA expression. The primers used in qRT-PCR were purchased from RiboBio (RiboBio, China) and the reaction was performed according to the manufacturer’s instructions.
+ Open protocol
+ Expand
4

Liver RNA Extraction and qRT-PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the liver tissues with RNAiso Plus reagent (TaKaRa Bio, Shiga, Japan). The cDNAs were synthesized using the AMV reverse transcriptase and random 9-mers in the TaKaRa RNA PCR Kit (version 3.0; TaKaRa Bio). The primer sets used for PCR amplification are listed in Table S1 (Supplementary Materials). Quantitative reverse-transcription PCR was performed with SYBR Green (TaKaRa), using a TaKaRa TP-815 instrument. The relative quantities of amplified DNA were analyzed using the software bundled with the TP-815 instrument and normalized to the mouse 36B4 mRNA level.
+ Open protocol
+ Expand
5

Transcriptional Profiling of Prostate Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA of PC-3, DU145, LNCaP, 22RV1, RWPE-1 or BPH1 cells after various treatments was extracted with TRIzol-reagent (Tel-Test; Austin, Texas, USA). First-strand cDNA was synthesized by reverse transcription of 2 μg total RNA using a Takara RNA PCR Kit (TaKaRa, Japan). The primers used were: glyceraldehyde 3-phosphase dehydrogenase (GAPDH): Hs02758991; HIF-1α: Hs00153153; HK2: Hs00606086; PDK1: Hs00176853; PKM: Hs00761782; and LDH-A: Hs01378790 (Invitrogen). The expression levels of target genes were normalized to that of the housekeeping gene GAPDH.
+ Open protocol
+ Expand
6

Hippocampus and Cortex RNA Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA from hippocampus and cortex tissues prepared in advance was extracted using TRIZOL reagent (Invitrogen, USA). Then 2 μg of RNA of each sample was transcribed to cDNA using the TaKaRa RNA PCR™ kit (Takara, Japan). The mRNA expression of Bdnf, Sirt1, App, Bace1 and Gadph was inspected using cDNA as a template for amplification utilizing the following primers: Bdnf IV (forward primer 5'-CAGAGCAGCTGCCTTGATGTT-3' and reverse primer 5'-GCCTTGTCCGTGGACGTTTA-3'); Sirt1 (forward primer 5'-GAGGTCTCGA TATGTGCTGGA-3' and reverse primer 5'-TTCCTGCAACCTGCTCCAAG-3'); App (forward primer 5'-GACTGACCACTCGACCAGGTTCTG-3' and reverse primer 5'-CTTGTAAGTTGGATTCTCATATCCG-3'); Bace1 (forward primer 5'-CCTACACCCAGGGCAAGT-3' and reverse primer 5'-GGGCAGTAGTAAC TTTGCAGT-3'); and Gapdh (forward primer 5'-CTTCCAGGAGCGAGACC-3' and reverse primer 5'-CGGAGATGATGACCCTTTT-3'). The expression levels of each sample were normalized against Gadph (internal control) and calculated using the comparative CT method (2−ΔΔCT).
+ Open protocol
+ Expand
7

Quantitative RNA Expression Analysis with qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA extraction was performed using the SV Total RNA Isolation System (Promega, Madison, WI, USA), and the RNA was subsequently digested with DNase I (Takara). The extracted RNA was reverse transcribed to cDNA using the Takara RNA PCR Kit (Takara, Kyoto, Japan). Quantitative real-time PCR (qRT-PCR) detection was performed using SYBR Premix ExTaq (Perfect Real Time; Takara Bio) on a Rotor-Gene 3000 system (Corbett Research, Sydney, NSW, Australia) to quantify gene expression levels. SAND (SGN-U316474) was employed as an internal control (Expósito-Rodríguez et al., 2008 (link)). The expression level of each gene was calculated using Rotor-Gene 6.1.81 software with two standard curves. The primer sequences are shown in Supplementary Tables S2, S3.
+ Open protocol
+ Expand
8

Quantitative Analysis of B-ALL Cell RNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cultured B-ALL cells using TRIzol (Invitrogen, Waltham, MA, USA), following the manufacturer’s instructions. The RNA concentration was examined by a NanoDrop™ 2000UV–Vis Spectrophotometer (ThermoFisher, Waltham, MA, USA). Complementary DNA (cDNA) were produced by using the TaKaRa RNA PCR Kit (TaKaRa Bio, Kusatsu, Shiga, Japan). The cDNA was amplified by SYBR Green real-time qPCR Kit (TaKaRa Bio) according to the manufacturer’s instructions. The expression levels of mRNA were measured by 2−ΔCt method. β-actin expression levels were used as internal control. The primers used in real-time (qRT-PCR) are shown in Additional file 1: Table S1. Each assay was performed in triplicate.
+ Open protocol
+ Expand
9

Total RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated using TRIzol reagent (BBI and purified with RNeasy mini spin columns (Qiagen, USA). Then, 1 μg of the total RNA was subjected to reverse transcription into cDNA using TaKaRa RNA PCR Kit (Takara Bio) according to the manufacturer's protocol.
+ Open protocol
+ Expand
10

Quantifying Gene Expression via RT-qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated with TRIzol, and complementary DNA was synthesized using TaKaRa RNA PCR kit (Takara Bio, Inc.) according to the manufacturer's protocol. The sequences of the PCR primers used in the amplification of the target genes are shown in Table I. RT-qPCR was performed with the double-stranded DNA dye SYBR Green PCR core reagents using the ABI ViiA 7 system (PerkinElmer, Inc., Waltham, MA, USA). Thermal cycler conditions were 95°C for 30 sec, and 40 cycles of 95°C for 5 sec and 60°C for 30 sec. Relative gene expression was determined by the delta delta Cq method (Applied Biosystems; Thermo Fisher Scientific, Inc.), with β-actin as the endogenous control using the Applied Biosystems ViiA™ 7 Real-Time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.) (16 (link)). Three independent experiments were performed, and the standard deviations (SDs) representing experimental errors were calculated. All data were analyzed using GraphPad Prism 5 software (GraphPad Software, Inc., La Jolla, CA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!