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Genequant 1300

Manufactured by GE Healthcare
Sourced in United States, United Kingdom

The GeneQuant 1300 is a UV/Vis spectrophotometer designed for the quantification of nucleic acids and proteins. It features a wavelength range of 190 to 1100 nm and can measure samples in both micro-volume and standard cuvette formats. The instrument provides accurate and reproducible results for a variety of applications, including DNA/RNA quantification, protein concentration determination, and more.

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44 protocols using genequant 1300

1

Determination of Hydroxymethylfurfural in Honey

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The Hydroxymethylfurfural (HMF) content of the honeys was determined following the White method (White, 1979 (link)). A clarified honey sample was compared to a reference standard in which HMF molecules were destroyed by Sodium Bisulphate (0.2% w/v). Both samples were measured spectrophotometrically (GeneQuant 1300, GE Healthcare, Silverwater, NSW, Australia) at 284 nm and 336 nm against a DI water blank, with HMF content reported in mg/kg of honey, and determined by the following: HMF(mg/100gofhoney)=((Abs284Abs336)Factor)/W (Note: W = weight of sample (grams); Factor = (126*100*1000*100)/(16830*1000) = 74.87 (126 = honey molecular weight; 16830 = molar absorptivity of HMF at 284 nm) (White, 1979 (link))).
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2

Quantitative Analysis of p53 Expression in HepG2 Cells Treated with β-CD-ellagic Acid Microspheres

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The RNA extracted from HepG2 cells treated with β-CD-ellagic acid microspheres (0.1, 0.3, and 0.5 g/L) for 6, 12, 24, 48 h, as described above, and the RNA extracted from cells without any treatment was used as the control. The purity identification and quantification of RNA were performed with GENE QUANT 1300 (GE Healthcare, Little Chalfont, UK). RNA was transcribed to cDNA using a RevertAid First strain cDNA Synthesis kit (#K1622, Fermantas, EU, Waltham, MA, USA). qPCR was performed with SYBR Green I (Applied Biosystems, FosterCity, CA, USA). An absolute quantification method was used to quantify the p53 genes, and the β-actin was used as an internal control. The primers for p53 were CAGCCAAGTCTGTGACTTGCACGTAC and CTATGTCGAAAAGTGTTTCTGTCATC, and the primers for β-actin were GCTCGTCGTCGACAACGGCTC and CAAACATGATCTGGGTCATCTTCTC.
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3

Synthesis and Purification of DNA Oligonucleotides

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All DNA oligonucleotides sequences (Supplementary Table S1) used in EMSA studies were synthesized using MerMade4 (Bioautomation, Plano, Texas, USA) automated synthesizer at 1 μmol scale with suitable controlled pore glass (Proligo Reagents, Hamburg, Germany) beads as a 3’ solid support. The synthesized oligonucleotides were deprotected and purified by denaturing PAGE (20%, 7 M urea) employing standard protocols. Quantification of all the oligonucleotides listed in Supplementary Table S1 was done at 260 nm using an ultraviolet-visible spectrophotometer (GeneQuant 1300; GE Healthcare, WI, USA) with the appropriate molar extinction coefficients (ϵ). The complimentary strands (1:1 ratio in concentration) were annealed by heating at 95°C for 5 min [in a buffer containing 5 mM Tris–HCl, pH 7.5, 15 mM NaCl and 0.1 mM ethylenediaminetetraacetic acid (EDTA), pH 8.0] and allowed to cool slowly to room temperature, after which, they were stored at –20°C.
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4

Quantifying mRNA Levels in White Adipose Tissue

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Total mRNA of white adipose tissues was isolated from samples using TRIzol Reagent (Invitrogen, Life Technologies Corp., Carlsbad, CA, USA) and cDNA was synthesized using a cDNA Reverse Transcription Kit (Applied Biosystems Inc., Foster City, CA, USA) according to the manufacturer’s instructions. The purity and quantity of the isolated RNA were spectrophotometrically determined using the GeneQuant 1300 spectrophotometer (GE Healthcare Bio-sciences AB, Uppsala, Sweden). The mRNA levels were determined using the Applied Biosystems 7500 Fast Real-Time PCR System with SYBR Green PCR Master mix (Applied Biosystems Inc., Foster City, CA, USA). The quantitative real-time PCR amplification procedure was briefly described as follows: samples were predenatured at 95 °C for 10 min followed by 40 cycles of amplification consisting of 15 s at 95 °C, 30 s at 55 °C, and 30 s at 72 °C; β-actin was used as the internal control. To verify the accuracy and specificity, all reactions were performed at least in triplicate, followed by melting curve analysis. The relative quantification of mRNA was evaluated using the 2−ΔΔCt method [42 (link)]. Dilution curves were adopted to assess the PCR efficiency as proposed by Bustin et al. [43 (link)]. The sequences of primers (Sangon Biotech Co., Ltd., Shanghai, China) were given in Table S3.
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5

Quantitative Analysis of Dye Mixture

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The performance of the epoxy mixture generator was measured using aqueous solutions of two dyes, tetrazine and Coomassie brilliant blue R-250 (Sigma-Aldrich) Fig. 3. A syringe pump (Fusion 200, Chemyx) was used to pump the two dyes through the device and the outputs were collected in acrylic cuvettes (Brand Tech Scientific). Optical absorbance values between 275 and 750 nm were measured using a UV-visible spectrometer (GeneQuant 1300, General Electric). The ratio of the tetrazine solution to the Coomassie blue solution for each output was determined by minimizing the squared error for the over-constrained system of equations
[x1x][a1a2anb1b2bn]=[c1c2cn] where x is the proportion of tetrazine solution, ai is the absorbance of tetrazine, bi is the absorbance of Coomassie blue, and ci is the absorbance of the output at wavelength i.
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6

Evan-Blue Permeability Assay Protocol

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For the EB permeability assay, 500 µL of freshly prepared EB solution (10 mg/mL in NaCl 0.9% saline solution; Sigma-Aldrich, NJ, USA) were placed on top of each mucosa fragment, previously placed upward in a Petri dish. After 10 min, samples were washed twice in saline solution (NaCl 0.9%): The first wash consisted of two rapid dips in 100 mL of saline solution, while the second one, in 50 mL of saline, lasted 5 min. At the end, all samples were trimmed and divided into two aliquots to get technical duplicates. Aliquots were then dried at 37°C in a thermostatic hood for 30 min and the mucosal layer was isolated, immediately weighed, placed in 3 mL of formamide (Sigma-Aldrich, NJ, USA) and incubated for 48 h at 50°C to extract EB dye. Colorimetric measurements were performed using a spectrophotometer (Gene Quant 1300; GE Healthcare, UK) at the maximum absorption for EB (620 nm). Micrograms of EB per mg of tissue were quantified using a standard curve (0.025-25 μg/mL EB in formamide) and samples’ weights. Data of the two technical replicates were averaged.
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7

Annealing of Modified and Unmodified DNA

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Modified (Table 1 and Figures S2 and S3) and unmodified DNA sequences were purchased from
Integrated DNA Technologies. The oligonucleotides were quantified
by employing a spectrophotometer (GE, GeneQuant 1300, WI) at 260 nm.
The complementary strands of the modified (2-AP incorporated) DNA
were taken in 20% excess, so as to ensure complete annealing of the
latter. For the unmodified constructs, the complementary strands were
taken in an equimolar ratio. The DNA sequences were annealed in the
presence of 1× annealing buffer (5 mM Tris, pH 7.5, 15 mM NaCl).
The mixture was subjected to a temperature of 95 °C for 5 min
by placing in a water bath, which was then allowed to cool slowly
to room temperature. The samples were stored at −20 °C.
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8

Quantifying Tissue Evans Blue Dye

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All the samples were dried at 37°C in a thermostatic hood for 30 minutes and were then immediately weighed, placed in a 15 mL conic tube with 3 mL of formamide (Sigma-Aldrich, St. Louis, MO, USA) and incubated for 48 hours at 50°C. The quantity of EBD extracted from the tissue was evaluated using spectrophotometric measurements (Gene Quant 1300; GE Healthcare, UK) at the absorption maximum for Evans Blue (620 nm). Micrograms of EBD per g of tissue were quantified using a standard curve (0.025–25μg/mL EBD in formamide) and each of the sample weights. The data of the two technical replicates were averaged.
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9

Quantification of Total Phenolic Compounds

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The total amount of phenolic compounds from the extracts was determined according to the Folin-Ciocalteu procedure with in house modifications (Singleton et al., 1965 (link)). Briefly, samples (200 μL) were introduced into test tubes with 1.0 mL of Folin–Ciocalteu reagent (1:1 v/v) and 2.5 mL of sodium carbonate (20%). The mixture was incubated for 30 min at room temperature and allowed to stand still for additional 30 min. The absorbance from the blue colored mixture was measured at 765 nm (Gene Quant 1300, GE Healthcare). The amount of total phenol was calculated as milligrams (mg) of Gallic Acid Equivalents (GAE)/g of dry mass from calibration curve of Gallic acid standard solution. For the Gallic acid, the curve absorbance versus concentration is described by the equation y = 1.5221x + 0.0081 (r2 = 0.9712).
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10

Fluorescence Analysis of sfGFP Variants

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Fluorescence (475 nm–575 nm excited at 480 nm) of 10 µM sfGFP, m1–m5, and m7–m11 in 20 mM Pipes (pH 7.2) containing 100 mM NaCl, 0.1% CHAPS, and 10% sucrose was measured by using GeneQuant 1300 (GE Healthcare Life Sciences) and F-2700 Fluorescence spectrophotometer (Hitachi High-Technologies, Tokyo, Japan), respectively. Fluorescence intensity of 25 µM sfGFP, mH1–mH5, and mH1C–mH5C in PBS was measured using Infinite F500 (Tecan, Männedorf, Switzerland) in 96 well plates with the specific filters (Ex/Em  = 485 nm/535 nm).
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