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13 protocols using ab119716

1

Quantification of MBD2 Protein Expression

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Each group of UM1 cells was lysed using RIPA buffer (Beyotime Biotechnology, Nantong, China). The total protein concentration was determined using a BCA Protein Assay kit (Beyotime Biotechnology, Nantong, China). Equal amounts of total protein were loaded in tracks, separated on 8% SDS polyacrylamide gels, and transferred to PVDF membranes (Pall, New York, NY, USA). Membranes were blocked for 1 h at room temperature with 5% milk in TBS containing 0.05% Tween-20 (TBST), incubated for 1 h with rabbit anti-human MBD2 monoclonal antibody (1 : 5000, ab109260, Abcam, Cambridge, MA, USA) or rabbit anti-human beta actin monoclonal antibody (1 : 2000, ab119716, Abcam, Cambridge, MA, USA), and washed three times with TBST. Membranes were incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG H&L secondary antibody (1 : 10000, ab97080, Abcam, Cambridge, MA, USA) for 40 min and washed three times with TBST, and proteins were visualized using ECL (Thermo Scientific Pierce ECL Plus).
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2

Analyzing Intestinal Wnt Signaling Pathway

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For the extraction of total protein, 100 μL RIPA lysis buffer (CW2334S; CWBIO, Beijing, China) and 1 μL Protease Inhibitor Cocktail (CW2200S; CWBIO, Beijing, China) were added to 100 mg of jejunal tissue, and the total protein was quantified using a bicinchoninic acid protein assay kit (CW0014; CWBIO, Beijing, China). Protein was separated by SDS-PAGE (Solarbio, Beijing, China) (20 μg per lane) and then transferred onto PVDF membranes (IPVH00010; Millipore, Danvers, MA). Next, the membranes were incubated with polyclonal goat anti-Wnt3 (ab116222; Abcam, UK), polyclonal rabbit anti-β-catenin (ab6302; Abcam, UK), monoclonal rabbit anti-TCF4/TCF7L2 (2565; CST, Boston, MA), polyclonal rabbit anti-ZO-1 (61-7300; Invitrogen, Camarillo, CA), and polyclonal rabbit anti-Claudin (ab129119; Abcam, UK) (all 1:2000 in Tris-buffered saline with Tween) overnight at 4°C. The membranes were incubated with HRP-conjugated rabbit anti-goat IgG (H&L) (1:5000; bs-0294R; Beijing Bioss Biotechnology Co., Ltd., Beijing, China) or HRP-conjugated goat anti-rabbit IgG (H&L) (1:5000; K008; Kmbio, Beijing, China) for 1 h at 37°C. Polyclonal anti-β-actin (1:5000; ab119716; Abcam, UK) was used for normalization of band intensities. The densitometric values of obtained immunoblot signals from 6 separate experiments were determined using Image J (National Institutes of Health, New York).
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3

Detecting eIF3d Protein Expression

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Western blotting to detect the eIF3d protein was performed using standard methods. Total protein was extracted from transfected cells with RIPA buffer, and the protein concentration was measured using a BCA Protein assay kit (Thermo Fisher Scientific, Inc.). The protein samples (30 µg) were subjected to SDS-PAGE (Bio-Rad, USA), transferred onto PVDF membranes and incubated overnight with primary antibodies at 4 °C. On the 2nd day, the membranes were incubated with secondary antibody at room temperature for 2 h. Immunoreactive bands were detected with an ECL western blotting system (Clarity Western ECL Substrate; Bio-Rad). The antibodies used in this study were as follows: rabbit anti-GAPDH (ab119716, Abcam), rabbit anti-eIF3d antibody (ab155419, Abcam), and goat anti rabbit IgG H&L (ab6721, Abcam).
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4

Western Blot Analysis of Cardiac Protein Expression

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A Western blot of mice hearts and CFs was performed as previously described (60 (link)). The antibodies used in this study are as follows: Smad2/3 (CST, 8685S, 1:1,000), phospho-SMAD2 (CST, 18338, 1:1,000), phospho-SMAD3 (CST, 9520, 1:1,000), and β-actin (Abcam, ab119716, 1:1,000). ImageJ software was used to quantify the intensities of the protein bands.
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5

Western Blot Analysis of Spinal Cord Proteins

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Total protein was extracted from the L4-L6 spinal cord segments as previously described66 (link). Proteins were separated by SDS-PAGE and transferred to PVDF membranes. The membranes were incubated overnight at 4 °C with the following primary antibodies: rabbit anti-GFAP (1:500) (ab53554, Abcam), rabbit anti-Substance P (1:500) (orb215527, Biorbyt), rabbit anti-CGRP (1:500) (ab47027, Abcam), rabbit anti-PDGF BB (1:300) (ab16829, Abcam), rabbit anti-pPDGFRα (1:1000) (#2992, Cell Signal), rabbit anti-pPDGFRβ (1:1000) (#2227,Cell signal), rabbit anti-ERK(1:500) (ab184699, Abcam), rabbit anti-pERK (1:1000) (#4370, Cell Signal), rabbit anti-AKT (1:500) (9272s, Cell Signal) and rabbit anti-pAKT (1:1000) (4056s, Cell Signal). The membranes were subsequently incubated with the appropriate secondary antibodies (1:5000; Abcam) for 1 h at room temperature. The protein bands were detected using an enhanced chemiluminescence detection system. Then, the membranes were stripped with stripping buffer (P0025, beyotime) and reblotted with antibodies against the loading controls [mouse anti-β-actin (1:5000) (ab119716, Abcam) and mouse anti-GAPDH (1:5000) (ab9484)]. The intensity of the immunoreactive bands was quantified using Image J software. The ratio of target protein to β-actin (loading control) levels was statistically analyzed. Western blot experiments were repeated 3 times.
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6

Immunoblotting Antibody Panel for Cell Cycle Analysis

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The following antibodies were used: mouse monoclonal antibodies against α-tubulin (Santa Cruz, sc-23948), Cdc27 (BD, 610454), GAPDH (Santa Cruz, sc-32233), cyclin B (Santa Cruz, sc-245), and Cdh1 (Abcam, ab3242); rabbit polyclonal antibodies against actin (Abcam, ab119716), Cdc20 (Abcam, ab64877), securin (SantaCruz, sc-56207), Lamin B (Abcam, ab16048), and pCdh1 [A gift from Dr. Dongmin Kang at Ewha Womans University22 (link)]; and a rabbit monoclonal antibody mixture against the phospho-Cdk substrate motif[(K/H)pSP] (Cell Signaling, #9477). Horseradish-peroxidase conjugated secondary antibodies were obtained from Santa Cruz. Anti-rabbit Alexa-594 antibody was purchased from Invitrogen (Invitrogen, A11012).
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7

Protein Extraction and Western Blotting

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Protein was extracted using lysis buffer (Thermo Fisher), and the concentration was evaluated using a bicinchoninic acid kit (Pierce, USA). Equal amounts of protein were taken from each sample, and transferring was performed with 10% SDS-PAGE (Bio-Rad, USA) using the semi-transfer method after the protein was mixed with loading buffer. The membrane was probed with primary antibodies to Col II (1:10000, ab34712, Abcam), aggrecan (1:100, ab36861, Abcam), Bax (1:1000, #14796, Cell Signaling Technology, USA), Bcl-2 (1:2000, #33-6100, Thermo Fisher), and β-actin (1:5000, ab119716, Abcam) overnight at 4°C. After tris-buffered saline-Tween (TBST) washing, the membrane was incubated with secondary antibodies goat anti-rabbit IgG H&L (HRP) (1:50000, ab205718, Abcam) and goat anti-mouse IgG H&L (HRP) (1:10000, ab205719, Abcam) at room temperature for 2 h, followed by one TBST washing. Proteins were detected by chemiluminescence (Millipore, USA).
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8

Western Blot Analysis of Apoptosis Markers

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The HEI-OC-1 cell line and cochlear tissue were lysed with ice-cold RIPA lysis buffer (PP109, Protein Biotechnology) plus Phosphatase Inhibitor Cocktails (04693132001, Roche) for 30 min at 4°C. Protein concentrations were determined using a BCA Protein Quantification Kit (PP202, Protein Biotechnology) according to the manufacturer’s instructions. Equal amounts of protein were loaded onto a 12% Tris-glycine SDS-PAGE gel, separated at 120 volts for 1.5 to 2 h, and then transferred to a nitrocellulose membrane and blocked with 5% milk in PBST [1 × PBS with 0.1% Triton X-100 (Solarbio, 1109F0521)] buffer. Cleaved caspase 3 was evaluated using anti-cleaved caspase 3 rabbit monoclonal antibody (1:1,000 dilution, 9664S, Cell Signaling Technology), and β-actin was measured using a mouse monoclonal antibody (1:5,000 dilution, ab119716, Abcam, Cambridge, United Kingdom). Peroxidase-conjugated goat anti-rabbit or anti-mouse immunoglobulin G (ab6789 and ab6721, Abcam) was used as the secondary antibody. The proteins were detected using a SuperSignal West Dura chemiluminescent substrate kit (34075, Thermo Scientific) according to the manufacturer’s instructions. Semi-quantification of the western blot results was done by measuring the intensities of the bands using ImageJ.
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9

Immunoblotting of SNAP Proteins

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For immunoblots, we homogenized and sonicated tissues and cells in cell lysis buffer (6 (link)) with protease inhibitors (Sigma-Aldrich). Lysates were run under denaturing conditions on 10% SDS-polyacrylamide gels and transferred to nitrocellulose membranes (Bio-Rad). Blots were probed with anti-SNAP23 (1:5000; Abcam: ab3340), anti-SNAP25 (1:50,000; Synaptic Systems: 111002), anti-SNAP29 (1:10,000; Abcam: ab138500), anti-SNAP47 (1:20,000; Synaptic Systems: 111403), anti-β-actin (1:20,000; Abcam: ab119716), and anti-GAPDH (1:30,000; Abcam: ab9483) antibodies.
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10

Western Blot Analysis of IL-37 Expression

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Total protein from tumor tissues and cultured cells were lysed in RIPA buffer with protease inhibitor (Beyotime, Shanghai, China). The protein was quantified using a BCA assay kit (Beyotime, Shanghai, China). A total of 20 μg of total protein were separated by 10 % SDS-PAGE, transferred onto polyvinylidene fluoride membranes, and then reacted with primary antibodies against IL-37 (24 kDa, ab101376, 1:500), and β-actin (42 kDa, ab119716, 1:1000) (all from abcam, Cambridge, UK). After being extensively washed with PBS containing 0.1 % Triton X-100, the membranes were incubated with alkaline phosphatase-conjugated goat anti-rabbit antibody for 30 min at room temperature. The bands were visualized using 1-step TM NBT/BCIP reagents (Thermo Fisher Scientific, Rockford, IL) and detected by an Alpha Imager (Alpha Innotech, San Leandro, CA).
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