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24 protocols using ab3576

1

Antibody-based Protein Quantification in Cellular Studies

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Antibodies for β-actin (sc-47778), COX2 (sc-19999), MMP1 (sc-21731), NRF1 (sc-101102), and SOD2 (sc-30080) were obtained from Santa Cruz Biotechnology. Antibodies for acetyl-histone H4 K5, K8, K12, and K16 (H4K5,8,12,16ac, #PA5-40084) were obtained from Invitrogen. Antibodies for anti-histone H3 acetyl K9, K14, K18, K23, K27 (H3K9, 14, 18, 23, 27ac, ab47915), ERα (ab3575), ERβ (ab3576), H4K20me1 (ab9051), H4K20me3 (ab9053), H4R3me1 (ab17339), H3K9me2 (ab1220), H3K9me3 (ab8898), H3K27me2 (ab24684) and H3K27me3 (ab6002), H2AX (ab20669), and γH2AX (ab2893) were obtained from Abcam. The antibody for 8-oxo-dG (4354-MC-050) was obtained from Novus Biologicals. The 3-nitrotyrosine (3-NT) was measured using 3-Nitrotyrosine ELISA Kit (ab116691 from Abcam) per manufacturers’ instructions. The mitochondrial fraction was isolated using a Pierce Mitochondria Isolation Kit (Pierce Biotechnology) according to manufacturers’ instructions. The protein concentration was measured using the Coomassie Protein Assay Kit (Pierce Biotechnology) per manufacturers’ instructions. Luciferase activity assay was carried out using the Dual-Luciferase™ Assay System (Promega) and the transfection efficiency was normalized using a cotransfected renilla plasmid (23 (link)). 17β-estradiol (E2, #E2758) and TNFα (#T0157) were obtained from Sigma.
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2

Immunohistochemistry and Immunofluorescence Staining of Ovarian Tissues and Cells

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Ovaries and follicles were fixed in cold 4% paraformaldehyde, for 48 and 24 h, respectively, dehydrated in ethanol and toluene, embedded in paraffin and sectioned at 5 μm onto APES-treated microscope slides (ZLI-9001, Zhongshan Company, Beijing, China) for immunohistochemistry48 (link) or immunofluorescence staining,49 (link) as previously described. Cells were fixed in cold 4% paraformaldehyde for 20 min, membrane osmosed in 0.1% triton X-100 for 5 min, blocked with 10% normal donkey serum for 1 h. COV434 cells and human MGCs transfected with vectors were treated at adherent state and freshly isolated human MGCs were treated at suspension state. Primary antibodies used for immunohistochemistry were diluted as follows: ERα (sc-542, 1:500; Santa Cruz Biotechnology, Santa Cruz, CA, USA) and ERβ (sc-8974, 1:2000; Santa Cruz Biotechnology). Primary antibodies used for immunofluorescence were diluted as follows: ERα (sc-542, 1:100) and ERβ (ab3576, 1:200; Abcam, Cambridge, UK). An isotype-matched IgG was used as the negative control.
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3

Comprehensive Western Blot Analysis

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Protein extractions were performed by RIPA buffer (ThermoFisher Scientific) supplemented with protease (Thermo Scientific Halt Protease Inhibitor Cocktail) and phosphatase (Halt Phosphatase Inhibitor Cocktail) inhibitors. 15 μg of extracted proteins were separated by SDS-PAGE and revealed by antibodies directed against actin (1:1000, Cell Signaling Technology #8457), Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:1000, Cell Signaling Technology #5174), ERα (1:1000, Abcam #ab32063), ERβ (1:500, Abcam #ab3576), PR ( ab133526), ErbB2 (1:1000, Cell Signaling Technology #4290) and the use of HRP Goat Anti-Rabbit (IgG) secondary antibody (1:5000, Abcam #ab6721). Alignment of ER, PR and aromatase peptide sequence shows more than 80% of homology between mouse's and human's proteins. For example, PR shows 80% of homology between the total sequences of the two species. The antibody used is designed on the C terminal domain which presents 95% of homology.
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4

Immunofluorescence Staining for Actin and Estrogen Receptors

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Cells were seeded in 6-well plates and maintained for 48 h. After being washed 3 times with PBS, cells were fixed in 4% paraformaldehyde solution for 30 min, permeabilized with 0.3% Triton X-100 for 10 min, and suspended in 10% normal goat serum (Gibco Life Technologies, USA) for 10 min, then incubated with the primary antibodies: α-Actin (1:1,000, Abcam Cat# ab69512, RRID:AB_2222725), ER-α (1:1,000, Abcam Cat# ab3743, RRID:AB_304042), and ER-β (1:1,000, Abcam Cat# ab3576, RRID:AB_303922) overnight at 4 °C. After another three washes with PBS, the cells were incubated with secondary antibody for 1 h at room temperature. DAPI (4',6-diamidino-2-phenylindole) reagent (Shanghai Leuven Biotechnology Co., Ltd., China) was used to counterstain the nuclei. The result of the staining was observed with an inverted fluorescence microscope system (OLYMPUS, X53, Olympus Corporation, Japan).
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5

Immunohistochemical Analysis of ccRCC

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We obtained paraffin-embedded ccRCC specimens from the Department of Pathology for 93 ccRCC cases from The Affiliated Hospital of Qingdao University. IHC staining was carried out as described previously [30 ]. Briefly, fresh tissues were fixed in formalin and embedded in paraffin, then sectioned at a thickness of 5 μm. The sections were dewaxed in xylene and rinsed in alcohol and in graded alcohol/water mixtures. Hydrogen peroxide (3%) was applied to block the endogenous peroxidase activity. The sections were subsequently treated in a microwave oven twice for 6 min in citrate buffer (pH 6.0) at 600 W to undergo antigen repairing. After blocking with goat serum for 30 min, sections were incubated with primary antibodies against estrogen receptor-β (ER-β) (ab3576) (1:50) and IGF-1R (ab39398) (1:100) (Abcam, Cambridge, MA, USA) at 4 °C overnight, followed by anti-mouse/rabbit horseradish peroxidase-labeled antibody (Univ-bio, Shanghai, China) as the second antibody. ER-β and IGF-1R staining were scored as 0, 1, 2, and 3 according to the proportion of positively stained cells and the intensity of the staining, as described previously [23 (link)].
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6

Molecular Mechanisms of Estrogen-Mediated Autophagy

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Estradiol (E2758, purity ≥ 98%), MPP dihydrochloride hydrate (M7068, purity ≥ 97%), PHTPP (SML1355, purity ≥ 98%) and 3-Methyladenine (3-MA, M9281, purity ≥ 99%) were purchased from Sigma (Saint Louis, USA). Antibody for NLRP3 (19771-1-AP) and IL-18 (10663-1-AP) were purchased from Proteintech (Wuhan, China). Antibody for caspase-1 (48847) was purchased from SAB signalway antibody (Maryland, USA). Antibody for GSDMD (A18281) and IL-1β (A16288) were purchased from ABclonal (Wuhan, China). Antibody for Beclin 1 (ab210498), LC3B (ab192890), SQSTM1 (ab56416), Hcy (ab15154), estrogen receptor alpha (ERα) (ab32063), estrogen receptor beta (ERβ) (ab3576), GSDMD (ab219800), and β-actin (ab8226) were purchased from Abcam (Cambridge, UK). FITC - goat Anti-mouse IgG (ab6785), TRITC - goat anti-rabbit IgG (BS10250), FITC - goat anti-rabbit IgG (BS10950), HRP - goat anti-rabbit IgG (BS13278), and HRP - goat anti-mouse IgG (BS12478) were purchased from Bioworld (Bloomington, USA). The prestained protein MW marker (26617) were purchased from Thermo scientific. Control siRNA and ERα siRNA (sc-29305) were purchased from Santa Cruz (Santa Cruz, USA).
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7

Western Blot Analysis of Astrocyte and Neuron Markers

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Expression of ERα, ERβ, GFAP, cleaved-Caspase-3 and Caspase-3 protein in primary cultured astrocytes, neurons or hippocampus were measured by western blot. In brief, soluble lysates of samples were mixed with sample buffer and NuPAGE reducing agent (Invitrogen). The extracted proteins were separated using 10% SDS-PAGE and then electrically transferred to polyvinylidene difluoride membranes. Subsequently, the membranes were blocked in 5% nonfat dry milk diluted in TBST for 1 h at room temperature. The western blots were probed with rabbit anti-ERα antibody53 (link) (ab75635, 1:500, Abcam), rabbit anti-ERβ antibody54 (link) (ab3576, 1:500, Abcam), mouse anti-GFAP antibody (GA5, 1:1000, Cell Signaling Technology), rabbit anti-cleaved-Caspase-355 (link) (#9661, 1:1000, Cell Signaling Technology) antibody, rabbit anti-Caspase-3 antibody56 (link) (#9662, 1:1000, Cell Signaling Technology) and mouse β-actin antibody57 (link) (#3700, 1:1000, Cell Signaling Technology) overnight at 4 °C. The membranes were then incubated with an IRDye secondary anti-rabbit and anti-mouse antibody (Thermo Scientific, USA) for 2 h. Protein bands were visualized using the LI-COR Odyssey System (LI-COR Biotechnology, USA).
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8

Mapping MAPK Signaling in Brain Endothelial Cells

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Human brain microvascular endothelial cells and MECs were collected after 48 h of infection. The total protein was extracted from both cell types and lysed in Radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, Hayman, China). The cell extract was centrifuged at 12,500 × g at 4°C for 25 min. Thereafter, the total protein (60 μg) was fractionated on 12% SDS-PAGE gels and transferred to polyvinylidene difluoride membranes for western blotting. Western blotting was performed by using a specific Phospho-MAPK Family antibody sampler kit (#9910) from Cell Signaling Technology (Danvers, MA, United States) to detect MAPK signaling pathway-related proteins phospho (p)-ERK (extracellular regulated kinase), p-JNK (JUN N-terminal kinase) and p-p38. Primary antibodies against the TNF-α (#6945) was also purchased from Cell Signaling Technology Inc. The primary antibodies against ERβ (#ab3576) and TLR4 (#ab13556) were purchased from Abcam company. β-actin was detected as an internal control using a mouse anti-β-actin monoclonal antibody (#HC201-02, TransGen Biotech, Beijing, China). The secondary antibodies against mouse IgG (#7076) and rabbit IgG (#7074) were purchased from Cell Signaling Technology Inc.
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9

Antibody Optimization for Proteomic Analysis

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Optima LC grade acetonitrile (ACN) were purchased from Merck, formic acid were purchased from Fluka, water were obtained from Watson. Primary antibodies were purchased from Abcam: ERβ (Abcam, ab3576, RRID: AB_303921), Ptgds (Abcam, ab182141, RRID: AB_2783784),
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10

Immunohistochemical Protein Expression Analysis

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The sections were heated in a microwave oven in citrate buffer (pH =6.0) for 20 minutes at 95°C and cooled at room temperature. The sections were then washed with phosphate buffered saline (PBS) for three times (3 minutes/time). Endogenous peroxidase activity was blocked in 3% H2O2 for 20 minutes at room temperature. After washing with PBS for three times (3 minutes/time), sections were incubated with normal goat serum for 30 minutes at room temperature. The sections were then incubated overnight at 4°C with specificity primary antibody (anti-ERα [ab37438], Abcam, UK; anti-ERβ [ab3576], Abcam; PI3 kinase p110α [C73F8], Cell Signaling, USA; AKT [C73H10], Cell Signaling; E-cadherin [24E10], Cell Signaling; vimentin [D21H3], Cell Signaling) 37°C rewarming for 45 minutes. The sections were washed three times with PBS (3 minutes/time), then incubated with GTVision (Gene Technology Shanghai Co., Ltd., Shanghai, People’s Republic of China) for 30 minutes at 37°C. The sections were then washed three times with PBS and visualized with diaminnobenzidinetetra-hydrochloride (DAB kit; Shanghai Secco Chemical Technology Co., Ltd., People’s Republic of China). Finally, the sections were counterstained with hematoxylin and dehydrated.
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