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10 protocols using calnexin 10427 2 ap

1

Western Blot Analysis of Extracellular Vesicles

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5X sodium dodecyl sulfate (SDS) buffer was used to denature the sEV supernatant at 95°C for 5 min and subject to western blot analysis (10% SDS-polyacrylamide gel electrophoresis; 50 μg of protein per lane). The primary antibodies CD63 (sc-5275, Santa Cruz, CA, United States), Alix (sc-53540, Santa Cruz, CA, United States), TSG101 (sc-13611, Santa Cruz, CA, United States), and calnexin (10427–2-AP, Promega, Madison, WI) were used to probe specific proteins. The cell lysates derived from mesenchymal stem cell (MSC) were used as control.
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2

Characterization of sEVs Protein Markers

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The sEVs enriched supernatant was denatured in 5× sodium dodecyl sulfonate (SDS) buffer and subjected to western blot analysis (10% SDS-polyacrylamide gel electrophoresis; 50µg protein/lane) using rabbit polyclonal antibody CD63 (sc-5275, Santa Cruz, CA, USA), TSG101 (sc-13,611, Santa Cruz, CA, USA), Alix (sc-53,540, Santa Cruz, CA, USA) and calnexin (10,427–2-AP, Promega, Madison, WI). The proteins were visualized on the Tanon4600 Automatic chemiluminescence image analysis system (Tanon, Shanghai, China).
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3

Exosome Protein Characterization by Western Blot

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The exosome supernatant was denatured in a 5× sodium dodecyl sulfonate (SDS) buffer and then underwent western blotting assay (50 µg protein/lane; 10% SDS-polyacrylamide gel electrophoresis) with calnexin (10427-2-AP, Promega, Madison, WI, USA), TSG101 (sc-13611, Santa Cruz, CA, USA), Alix (sc-53540, Santa Cruz Biotechnology, Inc., Dallas, TX, USA), HSP90 (60318-I-Ig, Proteintech, Rosemont, IL, USA), CD9 (60232-I-Ig, Proteintech), and rabbit polyclonal antibody CD63 (sc-5275, Santa Cruz). The proteins were visualized using the Tanon4600 Automatic chemiluminescence image analyzing method (Tanon, Shanghai, China).
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4

Characterization of Small Extracellular Vesicles

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Follow previous study, the morphology of SPEVs was observed by Transmission Electron Microscopy (TEM) and the size of SPEVs was detected by Nanoparticle Tracking Analysis (NTA). Furthermore, western blotting analysis of Calnexin (10,427–2-AP, Promega, Madison, WI), a negative marker of EVs, and EV markers protein such as anti-Alix (sc-53540, Santa Cruz, CA, USA), anti-Tsg101 (14497-1-AP, Proteintech), anti-CD9 (20597-1-AP, Proteintech), anti-CD81 (66866-1-AP, Proteintech) was used.
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5

Exosome Protein Profiling by Western Blot

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Exosomes were denatured in 5× sodium dodecyl sulfonate (SDS) buffer, and then rabbit anti-CD63 (sc-5275, Santa Cruz, CA, USA), CD9 (60232-I-Ig, Proteintech, Rosemont, IL), HSP90 (60318-I-Ig, Proteintech, Rosemont, IL), Alix (sc-53540, Santa Cruz, CA, USA), TSG101 (sc-13611, Santa Cruz, CA, USA) and calnexin (10427-2-AP, Promega, Madison, Wis Visualize protein detection results).
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6

Exosome Isolation and Characterization

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Exosomes were isolated by size exclusion chromatography. Briefly, 1 mL of 0.8 μm-filtered serum was diluted 1.5-fold with phosphate-buffered saline and further purified using Exosupur columns (Echobiotech, China) following the manufacturer’s instructions. Fractions were concentrated to 200 μL by 100 kDa molecular weight cutoff Amicon Ultra spin filters (Merck, Germany). The obtained exosome samples were observed by transmission electron microscopy, the particle size distribution was measured by nanoparticle tracking analysis using ZetaView PMX 110 (Particle Metrix, Meerbusch, Germany), and their concentration was determined. The exosomes were also identified by western blot analysis using rabbit polyclonal antibody CD63 (sc-5275, Santa Cruz, CA, USA), CD9 (60232-I-Ig, Proteintech, Rosemont, IL), HSP90 (60318-I-Ig, Proteintech, Rosemont, IL), Alix (sc-53540, Santa Cruz, CA, USA), TSG101 (sc-13611, Santa Cruz, California) and calnexin (10427-2-AP, Promega, Madison, Wisconsin). The proteins were visualized on the Tanon4600 Automatic chemiluminescence image analysis system (Tanon, Shanghai, China).
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7

Exosome Protein Profiling by Western Blot

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The exosome samples were denatured in 5× sodium dodecyl sulfonate (SDS) buffer before Western blot analysis as previously described. Briefly, 50 µg protein was loaded onto a 10% SDS‐polyacrylamide gel for electrophoresis. The rabbit polyclonal antibodies applied were CD63 (sc‐5275), CD9 (60232‐I‐Ig; Proteintech), HSP90 (60318‐I‐Ig; Proteintech), Alix (sc‐53540), TSG101 (sc‐13611), and calnexin (10427‐2‐AP; Promega). Protein bands were visualized using the Tanon 4600 automatic chemiluminescence image analysis system (Tanon).
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8

Western Blot Analysis of Extracellular Vesicles

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The EVs solution is mixed with sodium dodecyl sulfonate (SDS) buffer and subjected to western blot analysis (10% SDS-polyacrylamide gel electrophoresis; 50 µg protein/lane). Under the guidance of protein maker, corresponding bands of CD63, TSG101 and calnexin is cut and transferred to a PVDF membrane. After blocking with BSA, the membrane is incubated with antibodies, including rabbit polyclonal antibody CD63 (sc-5275, Santa Cruz, CA, USA), TSG101 (sc-13,611, Santa Cruz, CA, USA), Alix (sc-53,540, Santa Cruz, CA, USA) and calnexin (10,427–2-AP, Promega, Madison, WI). Finally, the membrane is rinsed to eliminate unbounded antibodies and visualized on the Tanon4600 chemiluminescence image analysis system (Tanon, Shanghai, China).
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9

Characterization of Exosome Properties

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Negative staining of exosomes suspension was performed and transmission electron microscopy was performed to identify the isolated exosomes. A total of 10 μl exosome suspension was deposited on a copper network, and phosphotungstate was coated on the grid. After drying for 2 min, 80 KV electron microscope was used for detection and imaging, and the final transmission electron microscope (HT‐7800) imaging results were obtained. Exosome suspension was treated with 200 μL RIPA lysis buffer (Beyotime, Shanghai, China) to extract protein. Electrophoresis was performed on 10% SDS‐PAGE gel, imprinted on PVDF membrane, and incubated with primary antibodies (CD63 (AB68418), TSG101 (AB125011), and calnexin (10427‐2‐AP, Promega)) at 4°C overnight. The PVDF membrane was then rinsed three times with a TBST‐containing buffer and incubated with secondary antibodies for 1.5 h at room temperature. The immune response bands were detected using a Western ECL kit (Beyotime). The exosome precipitates were resuspended with PBS and mixed evenly with a vortex agitator. Diluted samples were taken and exosome size was measured using a ZetaView device (Particle Metrix).
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10

Characterization of Small Extracellular Vesicles

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A total of 10 µL sEV‐enriched fraction was dropped on a copper mesh and incubated at 25°C for 10 min. The sEV‐enriched fraction was negative stained using uranyl acetate for 1 min. Subsequently, the sample was air dried for 2 min under incandescent light. Microphotographs were acquired using a transmission electron microscope (H‐7650, Hitachi Ltd., Tokyo, Japan).
Nanoparticle tracking analysis (NTA) was performed on the sEV‐enriched fractions using ZetaView PMX 110 (Particle Metrix, Meerbusch, Germany) equipped with a 405 nm laser module. The obtained data were analyzed using the corresponding software (ZetaView 8.02.28). To measure the size, concentration, and number of particles in the light‐scattering instrument, samples were diluted by PBS at concentrations between 1 × 107/mL and 1 × 109/mL.
Western blot analysis was performed to identify sEV‐positive (TSG101, sc‐13611, Santa Cruz, CA, USA; CD63, sc‐5275, Santa Cruz; and Alix, sc‐53540, Santa Cruz) and negative (calnexin, 10427‐2‐AP, Promega, Madison, WI, USA) markers. In brief, the sEV supernatant was denatured in 5× sodium dodecyl sulfonate (SDS) buffer and subjected to western blot analysis (10% SDS‐polyacrylamide gel electrophoresis; 50 µg protein/lane) using the above rabbit polyclonal antibodies. Proteins were then visualized on a Tanon 4600 automatic chemiluminescence image analysis system (Tanon, Shanghai, China).
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