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Rt2 sybr green rox qpcr master mix kit

Manufactured by Qiagen

The RT2 SYBR Green ROX qPCR Master Mix kit is a ready-to-use solution for real-time quantitative PCR (qPCR) analysis. It contains all the necessary components, including a SYBR Green-based detection system and a ROX passive reference dye, for gene expression analysis.

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4 protocols using rt2 sybr green rox qpcr master mix kit

1

Quantitative RT-PCR Analysis of Extracellular Matrix Genes

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Total RNA was extracted by (Sigma; #RTN350-1KT). cDNA was generated using QuantiTect Rev. Transcription Kit (#205313; Qiagen). qPCR was performed using RT2 SYBR Green ROX qPCR Mastermix Kit (#330523; Qiagen). qPCR assay was performed on ABI Quantstudio 5 machine and normalized to Gapdh.
Primers used for qPCR are listed as follows: Gapdh: 5′-F-TCA​CCA​CCA​TGG​AGA​AGG​C-3′, 5′-R-GCTAAGCAGTTGGTGGTGCA-3′; Fn1: 5′-F-CCC​AGC​TCA​CTG​ACC​TAA​GC-3′, 5′-R-TTCTCCTGCCGCAACTACTG-3′; Inhba: 5′-F-GGA​GAT​AGA​GGA​CGA​CAT​TGG​C-3′, 5′-R-CTGGTTCTGTTAGCCTTGGGG-3′; Itga5: 5′-F-CTT​CTC​CGT​GGA​GTT​TTA​CCG-3′, 5′-R-GCTGTCAAATTGAATGGTGGTG-3′; Acvr1b: 5′-F-GTG​GGG​ACC​AAA​CGA​TAC​ATG-3′, 5′-R-CTGGTCACATACAACCTTTCGC-3′; Acvr2a: 5′-F-GGG​ACG​CAT​TTC​TGA​GGA​TAG-3′, 5′-R-GCCATTCCTGCATGTTTCTGC-3′;
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2

Quantitative Gene Expression Analysis

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Total RNA was extracted using an RNA-isolation Kit (Qiagen, 74106) and cDNA was produced using reverse transcription supermix (Bio-Rad, 1708841). Real-time quantitative polymerase chain reaction (RT-qPCR) for all targets was performed on a QuantStudio 6 Flex Real-Time PCR Systems using RT2 SYBR®Green Rox qPCR master mix Kit (Qiagen, 330521). The relative quantification of the target gene was analyzed using the 2−ΔΔCt method. GAPDH was used as an internal control.
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3

Quantitative RT-PCR Analysis of Oct4, 18s RNA, and lncRNAs

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The cDNA was prepared using an iScript gDNA Clear cDNA Synthesis Kit (BioRad). Quantitative RT-PCR was performed using RT2 SYBR Green ROX qPCR Master Mix kit (Cat#330522, Qiagen) for Oct4 exon 1 primers or SensiFAST™ SYBR NO-ROX Mix (Bioline) for 18s RNA and lncRNAs. The qRT-PCR primers for Oct4 exon1 and 18s RNA were previously described (Cherepanova et al., 2016 (link)). For lncRNAs, we used primers as ENSMUST00000140952 (F: CACCCCAGCCCGGTAAAC R: CAT​GGG​CGA​TCC​ACA​TGA​A) and ENSMUST00000173605 (F: TTC​CTT​CTG​CGT​CAG​TAT​CAT​CTT R: CCA​AGC​TGC​TTT​GCT​CAA​ATT).
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4

cDNA Synthesis and qRT-PCR Analysis

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The cDNA was prepared using RT2 First strand synthesis kit (Cat#330404, Qiagen) as per the manufacturer’s protocol. qRT-PCR was performed using RT2 SYBR Green ROX qPCR Master Mix kit (Cat#330522, Qiagen). The qRT-PCR primers for the selected mRNA and lncRNAs were either custom designed using PrimerQuest tool and obtained from Integrated DNA technologies or ordered form Qiagen. Tables S1 and S2 (Supplementary File II) lists details of all the primers used in this study.
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