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13 protocols using goat anti rabbit igg horseradish peroxidase conjugate

1

Monitoring Protein Thiol Redox States in HPASMCs

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HPASMCs (ScienCell Research Laboratories, Carlsbad, CA, USA) were serum-starved overnight and treated with recombinant human PDGF-BB or H
2O
2 for 10, 15 or 30 min. Protein thiol states were monitored using SulfoBiotics Protein Redox State Monitoring Kit Plus (Dojindo Molecular Technologies, Rockville, MD, USA) in accordance with the manufacturer’s instructions. Briefly, cells were washed, proteins precipitated with trichloroacetic acid and “Protein-SHifters” were added to each sample. Samples were then loaded onto a sodium dodecyl sulfate polyacrylamide gel and electrophoresed. The gel was exposed to UV light to cut the “Protein-SHifters.” The resultant non-reducing SDS polyacrylamide gel was electroblotted to a nitrocellulose membrane (Bio-Rad Laboratories, Hercules, CA, USA). The membrane was blocked with 5% milk for 30 min at room temperature and incubated with the anti-Prx6 antibody produced in rabbit (Sigma-Aldrich Chemical Company, St. Louis, MO, USA; Catalogue no. P0058; 1:1,000 dilution) at 4°C overnight. The membrane was then washed three times and incubated with goat anti-rabbit IgG-horseradish peroxidase conjugate (Bio-Rad; Catalogue no. 1706515; 1:3,000 dilution) for 45 min at room temperature. After washing three times, signals were obtained using an Enhanced Chemiluminescence System (GE Healthcare Bio-Sciences, Pittsburgh, PA, USA).
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2

Detecting GFP Protein in Transgenic Plants

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For detecting the presence of GFP protein in transgenic lines, the total proteins were first extracted from mature leaf tissues using the Plant Total Protein Extraction kit (Sigma-Aldrich). The protein extract was then subjected to SDS-PAGE. They were heated with NuPAGETM LDS sample buffer containing 10% reducing agent (500 mM DTT) at 70°C for 10 min, then analyzed under a NuPAGETM 4–12% Bis-Tris gel with a MES SDS running buffer containing antioxidant as instructed by the manufacturer. For immunoblotting, proteins were transferred onto a PVDF membrane (Bio-Rad, Hercules, CA, United States). The membrane was then blocked at 25°C for 1 h with 15% (w/v) dry milk dissolved in PBST. It was then incubated at 25°C for 1 h with 1:200 diluted primary antibody anti-GFP (B-2) (sc-9996; Santa Cruz Biotechnology, Dallas, TX, United States) followed by incubation in the secondary antibody Goat anti-Rabbit IgG horseradish peroxidase conjugate (Bio-Rad). The luminescent signals were generated after incubation with SuperSignal® West Pico Chemiluminescent substrate (Pierce biotechnology, Rockford, IL, United States) and captured by Kodak Biomax X-ray film (PerkinElmer, Waltham, MA, United States). For staining the PVDF membrane, 0.2% (w/v) Amido Black 10B (MP Biomedicals, Santa Ana, CA, United States) in 10% (v/v) acidic acid was used.
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3

Isolation and Detection of P. aeruginosa Flagella

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Surface flagella were harvested as previously described [52] (link). Briefly, P. aeruginosa strains were grown at 37°C in LB (with antibiotics as required), harvested by centrifugation, and resuspended in 50 mM sodium phosphate (pH 7.0) containing 10 mM MgCl2. Flagella were sheared by blending bacterial suspensions for 20 seconds in a Waring blender. Flagellar detachment was monitored by viewing cells under the microscope for loss of swimming. Samples were centrifuged at 12,000×g for 30 min at 4°C to pellet cell bodies. The supernatants containing sheared flagella were separated by SDS-PAGE and blotted to PVDF. Flagellin was detected using anti-FliC antiserum (1∶4000) [53] (link). A goat antirabbit IgG horseradish peroxidase conjugate was used as a secondary antibody (1∶4000, Bio-Rad). Detection was performed using ECL substrate (100 mM Tris-HCL pH 8.5, 250 mM luminol, 90 mM coumarate, 0.009% H2O2), and blots were visualized and anlysed using an Image Station 2000R running Carestream MI Software Version 5.0.2 (Kodak). Protein in cell pellets was determined by BCA assay (Pierce) and supernatant equivalent to 25 µg was loaded on the gel for analysis. Rabbit polyclonal antiserum generated against P. aeruginosa Hfq was used to confirm equal loading of protein samples.
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4

Immunodetection of Pepper GalLDH

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SDS-PAGE was carried out in 7.5% acrylamide slab gels as described by [56] (link). Then, proteins were transferred onto PVDF membranes in a semi-dry Trans-Blot cell (Bio-Rad). For the cross-recognition assays after transfer proteins to membranes, the purified IgG from polyclonal antibodies against GalLDH (dilution 1:100) was utilized. For the immunodetection in membranes, a goat anti-rabbit IgG–horseradish peroxidase conjugate (BioRad) as the secondary antibody and an enhanced chemiluminescence kit (Clarity™ Western ECL substrate, BioRad) were used.
For the immune cross-reactivity assays previous to enzyme activity measurements, samples were incubated at 4 °C overnight with different dilutions of the antibody against the 15-aminoacid peptide located at the internal sequence of the pepper GalLDH.
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5

Immunoblotting and Immunofluorescence Antibodies

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In the experimental procedures described, the following antibodies were used: rabbit monoclonal anti-LRP1 (Ab92544; Abcam), mouse monoclonal anti-ABCA1 (Ab18180; Abcam), rabbit monoclonal anti-PSAP (ab166910; Abcam), mouse monoclonal anti-CTSD (NBP1-04278 Novus Biologicals), goat anti–SR-B1 (NB400-131; Novus Biologicals), rabbit anti-ABCG1 (ab36969; Abcam), rat anti–Wnt-5a (MAB645; R&D Systems), mouse monoclonal anti–β-actin (A5441, Sigma-Aldrich, 1:5,000), anti–α-tubulin (Ab4047, Abcam), anti-GAPDH (Ab8245), rabbit anti-GST (sc-459), goat anti-rabbit IgG-horseradish peroxidase conjugate (170–6515: Bio-Rad Laboratories,), goat anti-mouse IgG-horseradish peroxidase conjugate (170-6516; Bio-Rad Laboratories), and goat anti-Rat IgG-horseradish peroxidase conjugated (HAF005; R&D Systems). For immunofluorescence, Alexa Fluor–conjugated secondary antibodies and Alexa Fluor 488–conjugated and 568–conjugated antibodies were purchased from Jackson ImmunoResearch.
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6

Immunoblotting Analysis of Cyanobacterial Proteins

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Crude and soluble fractions of E. coli were prepared as described previously41 (link). Crude extracts of cyanobacterial cells were prepared and Western blot analyses were performed as described previously16 (link). After SDS-PAGE, proteins were transferred onto PVDF membranes and were incubated with an antiserum against ChlB or ChlN from L. boryana15 (link), 26 (link), followed by goat anti-rabbit IgG-horseradish peroxidase conjugate (Bio-Rad). Protein bands were visualized using a chemiluminescent substrate (ECL Western Blotting Analysis System; GE Healthcare).
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7

Immunoblot Analysis of PpaPV1 Cross-reactivity

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Cross-reactivity of PpaPV1 with PV1s from other clades were assayed with anti-PcOvo and anti-PsSC sera. PV1s (7 μg) and molecular weight marker (Dual Color, Bio-Rad) were transferred from SDS-PAGE 16% gels onto nitrocellulose membranes (Amersham) in a Mini Transblot Cell (Bio RadLaboratories, Inc.), using 25 mM Tris–HCl, 192 mM glycine, 20% (v/v) methanol, pH 8.3 buffer. After blocking for 2 h at room temperature with 3% (w/v) nonfat dry milk in PBS-Tween, the membranes were incubated overnight at 4 °C with polyclonal antibodies against PcOvo (Dreon et al., 2003 (link)) in 1:10.000 dilution, or polyclonal antibodies against PsSC (Ituarte et al., 2008 (link)) in a 1:12.000 dilution, in 3% (w/v) nonfat dry milk in PBS-Tween. Specific antigens were detected after incubating 2 h at room temperature goat anti-rabbit IgG horseradish peroxidase conjugate (BioRad Laboratories, Inc.). Immunoreactivity was visualized by electro-chemiluminiscence in a Chemi-Doc MP Imaging System (Bio Rad).
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8

SDS-PAGE and Western Blotting Analysis

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Furthermore, 15 μL of 2 × SDS-sample buffer containing 10% β-mercaptoethanol was added to 15 μL SDS-PAGE sample, stirred for 10 min (MicroMixer E-36), and then heat-treated (95 °C, 5 min). For mass spectrometry analysis after SDS-PAGE, acrylamide solution was added to 1% final concentration after heat treatment and stirred for 10 min. These samples were loaded onto a polyacrylamide gel (15% acrylamide) and electrophoresed at a constant voltage of 200 V for 60 min. After electrophoresis, the gels were stained with CBB (Quick CBB Plus, Wako Pure Chemicals, Osaka, Japan).
Western blotting analysis was conducted essentially as described in a study by [12 (link)]. Protein concentrations of each fraction were determined using a Protein Assay Kit (Bio-Rad, Hercules, CA, USA) with bovine serum albumin as the standard, and 0.4 µg of protein was loaded into each lane. A PVDF membrane (Immobilon P, Merck, Darmstadt, Germany) was incubated with the antisera (for anti-CmpA [11 (link)] and anti-CP47 [21 (link)] antisera), followed by the incubation with goat anti-rabbit IgG–horseradish peroxidase conjugate (Bio-Rad). The specific protein bands were visualized using an iBright 1500 (Invitrogen Thermo Fisher Scientific, Waltham, MA, USA).
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9

Western Blot Analysis of PcH Protein

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Purified PcH, together with CCH and FLH were run in an SDS-PAGE gel and electrotransferred onto a nitrocellulose membrane for 1 h at 100 V in a Mini Transblot Cell (Bio RadLaboratories, Inc.), using 25 mM Tris–HCl, 192 mM glycine, 20% (v/v) methanol, pH 8.3 buffer. The membrane was blocked for 1 h with 5% (w/v) nonfat dry milk in PBS–Tween, and then incubated overnight at 4 ºC with the anti-PcH rabbit polyclonal antibody diluted 1/6000 in 1% (w/v) nonfat dry milk in PBS–Tween. After washing with PBS–Tween, the membrane was incubated with goat anti-rabbit IgG horseradish peroxidase conjugate (BioRad Laboratories, Inc.) diluted 1/6000 and the immunoreactivity was visualized by electro-chemiluminiscence in a ChemiDoc Imaging System (BioRad Laboratories, Inc.) and analyzed using ImageJ software (www.imagej.net).
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10

Immunoblot Analysis of Petunia and E. coli Proteins

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Immunoblot analysis was performed essentially as described previously61 (link) using petunia crude extracts and plastids, E. coli crude extracts, and the purified PhpCAT53-583. Protein sample concentration was determined by the Bio-Rad Bradford protein assay. To solubilize membrane proteins, protein-loading dye containing 10% SDS was added to protein samples, which were then incubated at room temperature for 3 h, and centrifuged at 5,000g for 5 min to pellet debris. Immunodetection was performed on 2.5 μg protein using purified rabbit anti-PhpCAT polyclonal antibodies (1:3,000) generated against a synthetic peptide CMIDPDAPFSGAFMG (Genscript, Piscataway, NJ; http://www.genscript.com/custom-polyclonal-antibody-production-services.html). A goat anti-rabbit IgG horseradish peroxidase conjugate (1:30,000) was used as secondary antibody (Bio-Rad, Hercules, CA; 170-6515). Antigen bands were visualized using an enhanced chemiluminescence reagent (PerkinElmer, Waltham, MA) according to the manufacturer's protocol, and exposing the gels on Eastman Kodak X-OMART AR film. An uncropped immunoblot corresponding to Fig. 4a is shown in Supplementary Fig. 9.
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