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Live dead baclight bacteria viability kit

Manufactured by Thermo Fisher Scientific
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The LIVE/DEAD BacLight bacteria viability kits are a set of fluorescent stains used to distinguish viable (live) and non-viable (dead) bacterial cells. The kits utilize two nucleic acid stains: SYTO 9 green-fluorescent stain, which labels all bacteria, and propidium iodide, which only penetrates bacteria with damaged membranes. This allows for the differentiation and quantification of live and dead bacterial populations.

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12 protocols using live dead baclight bacteria viability kit

1

Microscopic Characterization of E. coli Viability

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A BW25113 mazF::Δ strain (strain S3 in Supplementary Table I) transformed with pBbS2k-mazF-U or pBbS2k-mazF-P (plasmid P1-2 in Supplementary Table I) was grown overnight at 37 °C in LB media and then diluted to an OD600 of 0.01 in 5 ml LB media. At an OD600 of 0.3, 5 ng ml−1 aTc dissolved in 100% ethanol was used to induce the cells and an equivalent volume of 100% ethanol was administered to the uninduced cell populations. Following 0 and 7 h, cells were prepared for fluorescent microscopy using the LIVE/DEAD Baclight Bacteria Viability Kit (Thermo Fisher) to characterize the fraction of viable cells across the population. Microscope images were collected using a Zeiss Axio Observer D1 and Plan-Apochromat 63/1.4 Oil Ph3 M27 objective (Zeiss). Cells were imaged using excitation BP 470/40 and emission BP 525/50 (Filter Set 38 High Efficiency) or excitation 560/40 and emission BP 630/75 (Filter Set 45). Images were captured with a Hamamatsu ORCA-Flash4.0 using the ZEN Software (Zeiss). Cell Counter (Fiji)63 (link) was used to analyse the images and quantify the number of viable and dead cells. Technical replicates consisted of aliquots of E. coli cultures that were independently prepared for microscopy using the LIVE/DEAD protocol.
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2

Quantifying Live and Dead Bacteria in Dual-Species Biofilms

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After the bacterial adhesion phase, the dual-species biofilms were examined with a confocal laser scanning microscope (CLSM; Fluoview FV 1,000, Olympus, Tokyo, Japan). The biofilms were stained with a Live/Dead® BacLight™ Bacteria Viability Kit (Thermo Fisher Scientific, USA) in the dark for 15 min and examined using excitation/emission wavelengths (nm) of 485/498 for SYTO® 9 (green fluorescence for live bacteria) and 535⁄617 for propidium iodide (red fluorescence for dead bacteria). Ten images, each with an area of 212.34 µm × 212.34 µm, were acquired from each double combination of SYTO® 9 and propidium iodide fluorophore-stained biofilm using a 0.5 μm step size. The acquired data were analyzed with the BioimageL software (v.2.0. Department of Oral Biology, Malmö University, Sweden) based on color segmentation algorithms to generate the respective percentages of live and dead bacteria within the biofilm.
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3

Biofilm Viability Imaging via CLSM

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Biofilms were cultured overnight at 37°C in TSBG as described above. The supernatant was removed gently, and the biofilm mass that remained at the bottom of the well was stained with the Live/Dead BacLight bacteria viability kit (Invitrogen, United States) according to the instructions of the manufacturer. Live (stained with green fluorescent dye Syto9) and dead (stained with red fluorescent dye propidium iodide) cells were viewed with CLSM (Leica TCS SP8, Germany).
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4

Assessing Cell Viability using Live/Dead Staining

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To monitor cell viability, cells retained on surfaces were treated using a live/dead stain (LIVE/DEAD™ Baclight™ bacteria viability kit, Invitrogen, Scotland). After diluting the stains in dimethyl sulfoxide (Sigma, UK) according to the manufacturer’s instructions, the propidium iodide and Syto 9 dye components were individually diluted in a 1:10 solution in sterile distilled water in eppendorf tubes. Five microliters of each dilution was then mixed together, and 10 μL was spread across the sample and allowed to air dry in the dark in a microbiological Class II safety hood. Following drying samples were stored in the dark at 4 °C. Potentially viable and damaged cells were distinguished under the fluorescence microscope (Nikon Eclipse E600, Surrey, UK) since it is assumed that viable cells appeared green, whilst non-viable or membrane compromised cells appeared red. The microscope was mounted with an F-View II black and white digital camera (Soft Imaging System Ltd., Helperby, UK, supplied by Olympus, Hertfordshire, UK). This system used a Cell F Image Analysis package (Olympus, Hertfordshire, UK). The percentage coverage of the live and dead cells retained on the surface was measured using separate selective UV filters across the same field of view. Twenty fields of view using each UV filter were taken per surface.
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5

Bacterial Viability Staining Protocol

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Bacterial suspensions were stained with the LIVE/DEAD BacLight Bacteria Viability Kit (L7007, Invitrogen, Waltham, MA, USA). The BacLight consists of SYTO9, a membrane-permeant dye penetrating all cells, and PI, which is cell-impermeant and only enters damaged or dead cells. The staining reagent was prepared according to the manufacturer’s instructions. Briefly, component A (1.67 mM SYTO9/1.67 mM PI) and component B (1.67 mM SYTO9/18.3 mM PI) were mixed 1:1 in a microtube. Five microliters of the mixture was added to 1 mL of each bacterial suspension (5 µL/mL final concentration). The suspensions were subsequently mixed thoroughly and incubated in the dark for 25 min before measurement at RT. Microbeads (100 µL) (Invitrogen, USA) were added to the suspensions for cell quantification. Samples containing ASM without bacteria were prepared and stained to verify background noise. The autofluorescence of the bacteria was assessed using unstained cells, and positive controls were generated by pre-treating the cells with propanol (70% (v/v)) to cause membrane damage, maximizing PI penetration. Therefore, the membrane-damaged or dead cells were simply detected with the high intensity of PI.
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6

Bacterial Adhesion and Biofilm Formation

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The bacterial adhesion and biofilms formation on Smooth Ti and four groups of NT-H were also observed using CLSM. Similarly, the specimens were removed at four different time points and followed by gently washed three times with PBS. The samples were stained with 300 μL of combination dye (LIVE/DEAD BacLight bacteria viability kits, Molecular Probes, L13152) for 15 min in the dark and then were analyzed with a confocal laser scanning microscope (Leica TCS SP2; Leica Microsystems, Heidelberg, Germany). The viable bacteria with intact cell membranes appear fluorescent green, whereas nonviable bacteria with damaged membranes appear fluorescent red. The images were acquired from random positions on the surfaces of the samples. We used ATCC 43300 for the CLSM and SEM observation assays in this study.
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7

Live/Dead Bacterial Staining Protocol

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Using bacterial live/dead staining, bacteria were stained with green fluorescent SYTO 9 and red fluorescent propidium iodide. A volume of 500 μL of the suspension with 106 CFUs/mL bacteria was added to wells that contained scaffold specimens and incubated at 37 °C in a humidified atmosphere. After coincubation for 24 and 48 h with bacteria, the specimens were stained with 300 μL of combination dye (Live/Dead BacLight bacteria viability kits; Molecular Probes Life Technologies, Carlsbad, CA, USA) and observed with CLSM (Leica TCS SP2, Heidelberg, Germany). Live bacteria appear as fluorescent green, while the dead bacteria appear as fluorescent red.
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8

Bacterial Viability Imaging with CLSM

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After 6, 24, and 48 hours, the specimens were stained with 300 μL of a combination dye (Live/Dead BacLight bacteria viability kits; Molecular Probes Life Technologies, Carlsbad, CA, USA) and observed with a CLSM (Leica TCS SP2, Heidelberg, Germany). Bacteria were stained with green fluorescent SYTO 9 and red fluorescent propidium iodide.
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9

Biofilm Viability Quantification Using CLSM

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After 24 h incubation, the TSB medium were removed carefully from each well, and the discs were transferred into another 48-well plate and gently washed with PBS three times. Then the wells containing the titanium discs were added with 500 μl combination dye (LIVE/DEAD Baclight bacteria viability kits, L13152; Molecular Probes, Eugene, OR, USA) in a dark environment at room temperature for 15 min and were subsequently analyzed with a CLSM (Leica TCS SP2; Leica Microsystems, Heidelberg, Germany). The live/dead kit containing two kinds of fluorescence dyes were used to distinguish the viable and non-viable cells under the fluorescence microscope, because dye SYTO 9 can make the viable bacteria with intact cell membranes display green fluorescence, whereas dye PI (Propidium Iodide) can make non-viable bacteria with damaged membranes display red fluorescence. The Leica confocal software was used to analyze the biofilm images.
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10

Bacterial Adhesion and Biofilm Visualization

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The bacterial adhesion and biofilm formation were also observed using CLSM. The specimens were removed at three different time points and were gently washed three times with PBS. The samples were stained in a new 48-well plate with 300 μL of combination dye (LIVE/DEAD BacLight bacteria viability kits, L13152; Molecular Probes, Life Technologies, Carlsbad CA, USA) and analyzed with a CLSM (Leica TCS SP2; Leica Microsystems, Wetzlar, Germany). The viable and nonviable cells can be distinguished under the fluorescence microscope because viable bacteria with intact cell membranes appear fluorescent green, whereas nonviable bacteria with damaged membranes appear fluorescent red. The images were acquired from random positions on the surfaces of the samples. In this study, we used ATCC 35984 for the CLSM and SEM observation assays.
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