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31 protocols using atp disodium salt

1

Caspase-1 Activation by ATP in Quiescent Cells

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Cells were plated under complete F-12K media at 50,000 cells/well in sterile black walled 96-well plates and cultured 24 hours until 90% confluent. The media were replaced with serum free F-12K media and incubated overnight to allow the cells to become quiescent. Cells were incubated with ATP disodium salt (Sigma-Aldrich, St. Louis, MO) in a range of concentrations (500, 250, 50, 25, 5, 2.5, and 0 µM) under standard culture conditions for 60 minutes. The cells were lysed and the intracellular caspase-1 levels were quantified as described below.
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2

Culturing and Maintaining Primary Neuronal Cells

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Sodium Chloride (NaCl), magnesium chloride (MgCl2), calcium chloride (CaCl2), glucose, ATP disodium salt, HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid), naloxone hydrochloride and EGTA (ethylene glycol tetra acetic acid) were purchased from Sigma-Aldrich (St. Louis, MO). Potassium chloride (KCl) was purchased from Fisher Scientific (Waltham, MA) and collagenase type II was purchased from Worthington (Lakewood, NJ). Laminin and poly-D-lysine were purchased from BD bioscience (Franklin lanes, NJ); GDNF (glial cell-derived neurotrophic factor) was purchased from Neuromics (Edina, MN); FBS (fetal bovine serum) was purchased from Gemini Bio products (West Sacramento, CA); B-27, trypsin and neurobasal A media were purchased from Thermofisher (Waltham, MA). Morphine sulfate was obtained from National Institutes of Drug Abuse (Bethesda, MD).
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3

Chromatographic Analysis of Nucleotides

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ATP-disodium salt (ATP-2Na) (99%), ADP-disodium salt (ADP-2Na) (≧95%), AMP-disodium salt (AMP-2Na) (99%), DHB (98%), CHCA (98%), and aniline were purchased from Sigma-Aldrich (St. Louis, MO, USA). Tri-n-Butylamine and 1-methylimidazole were purchased from Alfa Aesar (Tewksbury, MA, USA). Butylamine and tri-n-propylamine were purchased from Acros Organics (Geel, Belgium). Pyridine was purchased from Showa (Saitama, Japan). Methyl alcohol (≥99.9%), ethyl alcohol (≥99.9%), and acetonitrile (≥99.9%) were purchased from Avantor (Radnor, PA, USA). The chemicals were used without further purification and pretreatment before experiments. Water was purified using a purification system (PORETECH, Ultrapure water system, Taiwan); all organic solvents were all HPLC grade.
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4

Preparation of Nucleotide Stocks for Injection

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Both ATP disodium salt (Sigma, St. Louis MO) and ADP sodium salt (Sigma, St. Louis MO) were dissolved in purified MQ water to make 100 mM stock solutions. ATPγS tetralithium (ATPγS, Tocris, Bristol UK) was dissolved in MQ water to make a 50 mM stock. ATP, ATPγS and ADP stocks were diluted to 1 mM (ATP, ATPγS) or 5 mM (ADP) in ASW for injection52 (link). For the pH effects experiment, 1 mM ATP was adjusted to pH 8.2 with NaOH. BzATP triethylammonium (Tocris, Bristol UK) was dissolved in MQ water to make a 10 mM stock and diluted to 300 uM in ASW for injection84 . Oxidized ATP (oATP) (EMD Millipore, Burlington, MA) was dissolved in MQ water to make a 1 mM stock and then diluted to 100uM in ASW for injection85 (link). PPADS sodium salt (Cayman Chemical, Ann Arbor, MI) was dissolved in ASW to create a 50 mM stock and diluted to 1 mM for injection86 (link).
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5

Evaluating ATP Production in Parasites

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To evaluate ATP production with l-Ala as their sole energy source, the parasites (approximately 5 × 107 cells per ml) were starved as described above and recovered or not (negative control) by incubation for 1 h in the presence of 5 mM His or Pro (as positive controls) or 5 mM l-Ala. The intracellular concentration of ATP in each sample was determined before and after recovery by using a luciferase assay according to the manufacturer’s instructions (Sigma). ATP concentrations were estimated by using a calibration curve (ATP disodium salt, Sigma); luminescence (λ570 nm) was detected using a SpectraMax i3 plate reader (Molecular Devices, Sunnyvale, CA).
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6

Intracellular ATP Quantification by Luciferase

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The intracellular concentration of ATP under each condition was determined by using a luciferase assay according to the manufacturer’s instructions (Sigma). ATP concentrations were estimated by using a calibration curve (ATP disodium salt; Sigma). Luminescence (λ at 570 nm) was detected using a Synergy H1 multimode microplate reader (BioTek, USA) as described previously (86 (link)).
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7

Calcium Signaling Protocols in Cells

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[γ-32P]ATP and 45CaCl2 were purchased from Perkin-Elmer, USA. [3H]Glucose and 45CaCl2 were products of DuPont NEN. The Ca2+ ionophore A23187 (calcimycin), EGTA (ethylene glycol-bis (β-aminoethyl ether)-N,N,N’,N’-tetra acetic acid), Mops (4-morpholinepropanesulfonic acid), liquid scintillation cocktail (Sigma-Fluor S-4023), ATP disodium salt, LaCl3, K-oxalate, benzene, 1,2-DCB was obtained from Sigma, Co. (St. Louis, MO). CaCl2 and other chemicals ware purchased from J.T. Baker (México). The Ca2+ ionophore A23187 was dissolved in ethanol. Benzene and 1,2-DCB were dissolved in methanol. Ethanol and methanol never reached a concentration higher than 1 % (v/v) in the reaction media after the addition of 1,2-DCB or A23187.
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8

Eukaryotic Cell Membrane Potential Measurement

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Plasma membrane potential Em of root elongation zone cells was measured using a glass microelectrode. A plant was fixed in a plexiglass chamber and immersed in assay solution (10 ml) containing 2 mM calcium chloride (CaCl2; with or without 5 mM ethylene glycol-bis(β-aminoethyl ether)-N,N,Nʹ,Nʹ-tetraacetic acid) (EGTA) or with or without 0.5 mM lanthanum chloride (LaCl3)), 0.1 mM potassium chloride (KCl), 1 mM MES–Tris (pH 6.0) for at least 30 min before impalement. Microelectrode construction, recording circuitry, and impalement are described in Methods S3. After observing a stable Em (> 6 min), eATP (ATP magnesium salt (MgATP) or ATP disodium salt (Na2ATP); Sigma) was added to the chamber (final concentration 300 µM in the assay medium, pH 6.0). In controls, magnesium sulphate (MgSO4) or sodium sulphate (Na2SO4) was added.
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9

Antiparasitic Drug Screening Assay

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Fetal bovine serum (FBS) and RPMI 1640 media, sodium pyruvate, penicillin-streptomycin and L-glutamine, were purchased from Invitrogen Gibco, Incl. LIT, RPMI 1640-modified medium and HMI-9 media were prepared at Tissue culture facility in Instituto de Parasitología y Biomedicina “López-Neyra”. Surfact-Amps NP40 was supplied by Thermo Scientific and Tween 20 by Merck. Sodium dodecyl sulfate (SDS) was purchased from Affymetrix. Chlorophenol red-β-D-galactopyranoside (CPRG), resazurin sodium salt, amphotericin B, p-formaldehyde, pentamidine isethionate salt, benznidazole, nifurtimox, posaconazole, ATP disodium salt, propidium iodide, podophyllotoxin, ribonuclease A (RNase A) from bovine pancreas, phorbol 12-myristate 13-acetate (PMA),3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and dimethyl sulfoxide (DMSO) were obtained from Sigma Aldrich. CellTiter-Glo Luminescent Cell Viability Assay was purchased from Promega Corporation and 4′, 6-diamidino-2-phenylindole (DAPI) Prolong from Molecular Probes.
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10

ATP Quantification in RWPE-1 Cells

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RWPE-1 cells were seeded in dishes at a density of 1 × 105 cells/well and treated with 10 nM DHT and/or MitoQ (25, 50, and 100 μM) for 24 h. ATP level was determined using a CellTiter-Glo® Luminescent Cell Viability Assay kit (Promega, WI, USA). ATP disodium salt (Sigma Aldrich, St. Louis, MI, USA) was used to generate an ATP standard curve. CellTiter-Glo® reagent was added to the samples, and luminescence was measured using an Epoch microplate spectrophotometer (BioTek, Winooski, VT, USA).
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