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61 protocols using xm10 camera

1

Localization of TcNDPK3 in Epimastigotes

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Epimastigote samples from the days 1-7 after transfection were washed twice with PBS. After letting the cells settle for 30 min at room temperature onto poly-L-lysine coated coverslips, parasites were fixed at room temperature for 20 min with 4% formaldehyde in PBS, followed by a cold methanol treatment for 5 min. Parasites were washed with PBS and incubated with polyclonal TcNDPK3 antibodies (1 : 200), followed by Alexa Fluor ® 488-conjugated secondary antibody and slides were mounted using Vectashield with DAPI (Vector Laboratories, Burlingame, CA, USA). Cells were observed in an Olympus BX60 fluorescence microscope. Images were recorded with an Olympus XM10 camera.
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2

Intracellular Calcium Mobilization Assay

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Intracellular Ca 2+ mobilization was measured as described by our group earlier. Confluent layers of HUVECs were cultured in 96-well plates for 24h followed by pretreatment with 400 μM of CoCl 2 for 4 h or 24 h. The cells were then loaded with 2 μM of Fluo-4-AM for 20 min, followed by a 20 min incubation in HBSS. Fluorescence microscopy was performed using an Olympus XM-10 camera. Baseline fluorescence was determined by taking three photos before adding 0.6 μM of rMASP-1, followed by sequential images every 5 s for 2 min. Changes in fluorescence intensity were calculated by analyzing at least 20 cells per image using CellP software. We used 50 μM of Histamine as a positive control.
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3

CREB and NFκB Activation in HUVECs

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For CREB experiments, HUVECs were treated with 0.6 μM of rMASP-1, 400 μM of CoCl 2 , or both for 2 h with or without 6 μM of C1INH. A second plate of HUVECs was placed in a hypoxic (1% O 2 ) incubator with or without 0.6 μM of rMASP-1 treatment for 2 h. In another experimental setup, HUVECs/HUAECs were treated with varying concentrations of rMASP-1 (0.06 μM, 0.2 μM, 0.6 μM, 2 μM), 400 μM of CoCl 2 , or the combination of each dose of rMASP-1 with CoCl 2 for 2h. For NFκB experiments, HUVECs were treated with 400 μM of CoCl 2 for 2 h with/without 0.6 μM of rMASP-1 in the last 1h. We used 1 ng/ml of IL-1β as a positive control in both CREB and NFκB experiments. Cells were then fixed in Methanol-Acetone and stained with rabbit-anti-human phospho-CREB (pCREB, 1:200) or rabbit-anti-human NFκB (1:250) followed by Alexa Fluor568-conjugated goat anti-rabbit (1:500) IgG and Hoechst 33342 (1:50000). For NFκB experiments, additional Alexa Fluor568-conjugated wheat germ agglutinin (WGA, 1:200) staining was added after for 20 min. Olympus IX-81 fluorescence microscope and an Olympus XM-10 camera were used to take photos. Photos were analyzed using CellP software (Olympus). Nuclear mean red fluorescence (pCREB) or the difference between cytoplasmic and nuclear mean red fluorescence (NFκB) were calculated.
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4

Permeability Assay with HUVECs

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Permeability tests were performed using an XPerT technique 61 (link) , slightly modified by Debreczeni et al. 24 (link) . Confluent layers of HUVECs were cultured in 96-well plates pre-coated with 250 μg/ml of biotinylated gelatin for 2 days. After treatment with 400 μM of CoCl 2 for 24 h and/or 0.6 μM of rMASP-1 for 20 min, 2 μg/ml of Streptavidin-Alexa488 was applied to each well for 2 min, and cells were fixed in 1% paraformaldehyde-PBS. We used 1 U/ml of thrombin as a positive control. Olympus IX-81 fluorescence microscope and an Olympus XM-10 camera were used to take pictures of each well. The plates were then read by a fluorescent plate reader (TECAN Infinite M1000 PRO) to determine the size of the stained area.
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5

Macrophage Phagocytosis of Apoptotic Cardiomyocytes

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To induce the apoptosis of HL-1 cardiomyocytes, cells were seeded in 6-well plates in Claycomb medium and exposed to 1 and 3 µM staurosporine for 5 h at 37 °C with 5% CO2. Cardiomyocyte apoptosis was confirmed by Annexin V staining using flow cytometry. Human macrophages derived from THP1 monocytes, previously exposed to the N1/N2 secretome, were incubated with PKH-labeled apoptotic cardiomyocytes (PKH26GL-1KT, Sigma) at a 1:3 ratio for 3 h. Upon the removal of the non-phagocytosed cells, the macrophages were stained with anti-human MerTK (as described below) and analyzed by fluorescence imaging using a fluorescence microscope, the Olympus IX81 (Olympus, Tokyo, Japan) equipped with an XM10 camera (Olympus, Tokyo, Japan), and processed using ImageJ 1.54f software.
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6

Histomorphometric Analysis of Diaphragm Muscle Fibrosis

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Transverse 8 μm thick frozen sections were cut from diaphragm muscle strips. Hematoxylin and eosin (H&E; Sigma-Aldrich) staining was used for muscle morphometric analysis97 (link). Digital images of H&E stained muscle were captured at 200 × magnification (DM1000 upright microscope, Leica). All histology image analysis was completed using Image-Pro Plus software (Media Cybernetics). Muscle fibre size is expressed as minimal ferret diameter to control for variation in the orientation of the muscle cross-section.
WGA is an effective tissue marker for fibrosis67 (link), due to the presence of WGA binding sites in the pericellular and interstitial matrices which in dystrophic muscles are enriched with collagen, proteoglycans, and glycosaminoglycans (e.g. hyaluronan)64 (link),66 (link). Diaphragm cross-sections were fixed in 4% PFA and stained with WGA conjugated with Alexa Fluor 594 (Thermo Fisher Scientific; 1:50 dilution in PBS) for 15 min. Nuclei were counter-stained with DAPI. Two non-overlapping images for each cross-section were captured on an Olympus 1X71 Inverted Fluorescence Microscope with an XM10 camera. To determine the percentage area of fibrosis in the diaphragm cross-sections, planimetric analysis of the digital images was completed using Image-Pro Plus software (Media Cybernetics)14 (link),98 (link).
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7

Immunofluorescence Imaging of Myosin Heavy Chain

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For labeling with mAb to myosin heavy chain (MF20), cultures were fixed with a mixture of 3.5% formaldehyde, 70% ethanol and 5% acetic acid and washed thoroughly before incubation with antibody. The samples were examined with an Olympus AX70 immunofluorescence microscope. Images were recorded on an Olympus XM10 camera and processed using the Olympus CellSens Standard 1.8.1 software. Cell scoring was carried out using the public domain software ImageJ.
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8

Neutrophil Viability Assay for MI

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Freshly isolated neutrophils from MI patients or health subjects (1 × 106 cells/mL) were seeded onto poly-L-lysine-coated wells in RPMI without FCS for 2 h in the presence of 2.5 µM SYTOX green. After 2 h, the medium was aspirated, cells were washed (twice), and Hoechst 33,342 (2 µM) was added for 20 min. After two washes, fluorescence microscopy was conducted with an Olympus IX81 microscope (Shinjuku City, Tokyo, Japan) equipped with an XM10 camera.
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9

Quantifying ROCK Inhibitor Impact on Cell Adhesion

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NRCF were treated for 24 h with 300 nM or 3 μM H1152P, or left untreated. The cells were then replated in NRCF growth medium containing the ROCK inhibitors on uncoated or collagen type I-coated (50 μg/cm 2 ) 12-well plates. After 20, 40 and 60 min ten bright-field images per condition were acquired using the time-lapse function of an inverted microscope (Olympus) equipped with a XM10 camera (Olympus), 10× objective and a humidified climate chamber set to 37 °C, 5% CO 2 . The number of adhered cell and all cells were manually counted.
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10

Actin Cytoskeleton Imaging in Cultured Cells

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NRCF were cultured in NRCF growth medium in the presence of 300 nM or 3 μM H1152P. After 48 h the cells were washed with PBS and fixed with 4% paraformaldehyde in PBS for 15 min. After three PBS washing steps permeabilization was carried out in 0.02% Triton X-100 in PBS for 3 min. Staining of the actin cytoskeleton with 0.5 μg/mL FRITC-labelled phalloidin and of the nuclei with 1 μg/mL DAPI in PBS was performed for 1 h at room temperature in the dark. Finally, the cells were washed twice with PBS and imaged using an inverted fluorescence microscope (Olympus) with a XM10 camera (Olympus) and a 10× objective. Bi-nucleated cells were counted and cell size analysis was performed with the free hand tool of ImageJ.
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