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20 protocols using gapdh 60004 1 lg

1

Western Blot Analysis for Protein Expression

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Clinical tissue specimens and cells were lysed in RIPA lysis buffer (Beyotime, Shanghai, China) and the protein concentration was measured using a BCA Protein Assay Kit. About 20 μg of protein per lane was separated by SDS-PAGE, and then proteins were transferred to a PVDF membrane. After blocking in 5% BSA for 1 h, the membranes were incubated overnight with the primary antibodies. Next day, the membranes were incubated with secondary antibodies (Proteintech, China) at room temperature for 2 h. The enhanced chemiluminescent (Thermo Fisher, USA) was used to visualize the target bands.
Antibodies against SHMT2 (11099-1-AP), LAMP1 (21997-1-AP), LAMP2 (66301-1-AP), Caspase-3 (19677-1-AP), Caspase-9(10380-1-AP), P62 (18420-1-AP), cytochrome C (66264-1-Ig), Atg7 (10088-2-AP) and GAPDH (60004-1-lg) were purchased from Proteintech (China). Antibodies against LC3 (12741), cathepsin B (31718), cathepsin D (69854), Bcl-2 (15071), Bax (41162), PARP-1 (9532), cleaved PARP-1 (5625), and HSP60 (12165) were purchased from CST (USA).
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2

Molecular Pathway Inhibition Analysis

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Deltarasin (S7224), BVD-523 (S7854), AZD6244 (S1008), and BMS-754807 (S1124) were obtained from Selleck (Houston, TX, USA). ALW-II-41-27 was obtained from AbMole (Houston, TX, USA). The antibodies used in this study were as follows: antibodies against phospho-c-RAF (Ser338) (9427s), c-RAF (53745s), phospho-p44/42 MAPK (ERK1/2) (Thr202/Tyr204) (4370L), p44/42 MAPK (ERK1/2) (4695s), phospho-AKT (Ser473) (4060s), AKT (4691s), phospho-p70 S6 kinase (Thr389) (9234s), p70 S6 kinase (2708s), phospho-EPHA2 (Tyr594) (3970s), phospho-EphA2 (Tyr588) (12677s), EPHA2 (6997s), IGF-I receptor β (3027s), phospho-IGF-I receptor β (Tyr1135) (3918s), phospho-WNK-1 (Thr60) (4946s), and phospho-GSK-3β (Ser9) (5558s) were all from Cell Signaling Technology (Cambridge, MA, USA). An antibody against KRAS (101667-T32) was purchased from Sino Biological, and an antibody against PDE6D (ab96825) was purchased from Abcam (Shanghai, China). GAPDH (60004-1-lg) was obtained from Proteintech (Rosemont, IL, USA).
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3

Antibody Reagents for Zika and Dengue

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Zika virus envelope (E) protein antibody (GTX133314) was purchased from GeneTex (San Antonio, USA). Dengue virus type 1–4 antibody (MA1-27093) was purchased from Invitrogen (Shanghai, China). Abs against Flag (F1804) and Myc (A00863-100) were purchased from Sigma–Aldrich (Shanghai, China) and GenScript (Nanjing, China), respectively. Abs against HA (66006-2-lg) and GAPDH (60004-1-lg) were purchased from ProteinTech Group (Wuhan, China). Anti-sodium potassium ATPase (Na+/K+-ATPase) antibody (EP1845Y) was kindly offered by Jing Yao from the College of Life Sciences at Wuhan University. Alexa Fluor 488 (34106ES60) and Alexa Fluor 647 AffiniPure Donkey Anti-Mouse (34113ES60) were purchased from YEASEN (Shanghai, China). LysoSensor™ Green DND-189 (L7535) and Thermo Fisher Scientific Page Ruler Prestained Protein Ladder (26617) were purchased from Invitrogen (Shanghai, China). Bestar® SYBR Green qPCR master mix reagent (DBI-2073) was purchased from DBI® Bioscience (Shanghai, China).
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4

Antibody-Based Apoptosis Signaling Assay

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Antibodies for GSDME (ab215191), GSDMD (ab209845) were purchased from Abcam (Cambridge, Cambridgeshire, Britain). Antibodies for caspase-1 (3866T), caspase-9 (9502T), caspase-3 (9668T), caspase-8 (9746T) and γH2AX (9718T) were purchased from Cell Signaling Technology (Danver, MA, USA), and GAPDH (60004-1-lg) was from Proteintech Group (Wuhan, Hubei, China). The secondary antibodies including HRP Goat Anti-Mouse IgG (H+L) (AS003), HRP Goat Anti-Rabbit IgG (H+L) (AS014) and FITC Goat Anti-Rabbit IgG (H+L) (AS011) were bought from Abclonal (Wuhan, Hubei, China).
Other reagents were purchased as follows: caspase-3 inhibitor (Z-DEVD-FMK) (HY-12466) and ROS scavenger N-acetyl cysteine (NAC) (HY-B0215) were from MedChemExpress (Monmouth Junction, NJ, USA); protease inhibitor cocktail tablets (BL612A) were from Biosharp (Beijing, China).
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5

Protein Expression and Drug Sensitivity

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Antibodies against the following proteins were used: SMYD2 (ab195365), STAT3 (ab68153), phospho-STAT3 (Y705, ab76315), DKK3 (ab186409), and P-gP (ab170904) from Abcam; β-tubulin (10068-1-AP), CDK6 (14052-1-AP), N-cadherin (22018-1-AP), and GAPDH (60004-1-lg) from Proteintech; and E-cadherin (11A24) and vimentin (BM0135) from Boster (Wuhan, China). The following reagents were used in this research: AZ505 (HY-15226), cisplatin (HY-17394), and sunitinib (HY-10255A) from MedChemExpress (Monmouth Junction, NJ, USA); and doxorubicin (A3966), 5-fluorouracil (5-FU) (A4071), and docetaxel (A4394) from APExBIO (Boston, MA, USA).
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6

Antibodies for P-p38 MAPK Signaling

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Antibodies against P-p38 MAPK (4511), p38 MAPK (9212), and P-MKK3/6 (12280) were purchased from Cell Signaling Technology (Beverly, MA). Antibodies against the HCV core protein (C7-50) (sc-57800) and TAB1 (B-3) (sc-166138) were purchased from Santa Cruz Biotechnology (Dallas, Texas, USA). Antibodies against HA (66006-2-lg and 51064-2-AP), Flag (20543-1-AP), TAB1 (27566-1-AP) and GAPDH (60004-1-lg) were obtained from ProteinTech Group (Wuhan, China). Alexa Fluor 488 (34106ES60), and Cy3 (33108ES60) were purchased from YEASEN (Shanghai, China). SB203580 (S1076) was purchased from Selleck Chemicals (Houston, TX). Dynabeads® Protein G (10004D) was from Invitrogen (Waltham, Massachusetts).
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7

TNBC Cell Line Culturing and Characterization

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MDA-MB-231 human TNBC cell line was obtained from the Key Laboratory of Breast Diseases in Jiangxi Province and cultured in high glucose DMEM with 10% fetal bovine serum (FBS). DMEM was purchased from Solarbio (Beijing, China), while FBS was purchased from Gibco (New York, USA). TRX (purity>98%, CAS:127-22-0) was purchased from Herbest Biochemical Technology Co., Ltd. (Baoji, China) and then dissolved in dimethyl sulfoxide (DMSO) from Macklin (Shanghai, China) to prepare a 20 mmol/L (mM) stock solution for storage at -40°C. tBHQ (purity>99%, CAS:1948-33-0) was purchased from MedChemExpress (Shanghai, China) and dissolved in DMSO to prepare a 10 mM stock solution for storage at -40°C.
Primary antibodies against epithelial-cadherin (E-cadherin, ab40772), neural-cadherin (N-cadherin, ab76011), Vimentin (ab92547), and Slug (ab85936) were purchased from Abcam (Cambridge, UK), while phospho-ERK1/2 (28733-1-AP), ERK1/2 (11257-1-AP), and GAPDH (60004-1-lg) were purchased from Proteintech (Chicago, USA).
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8

Western Blot Analysis of Protein Expression

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The proteins of tissues and cells were lysed in M-PER Protein Extraction Reagent (Pierce) mixed with protease inhibitor cocktail. BCA assay kit (Pierce) was used to determine the protein concentrations. The proteins were then separated on 8% SDS-PAGE, and transferred onto nitrocellulose membranes. After blocked with 5% non-fat milk for 1.5 h at room temperature, the membrane were incubated with primary antibodies overnight at 4°C, and followed by incubation with the corresponding secondary antibodies for 1.5 h. The blots were detected by ECL chemiluminescence kit (Millipore). These primary antibodies were obtained from Cell Signaling Technology (Danvers, USA), FOXK1 (# 12025), mTOR (# 2983), p-mTOR (# 5536), AKT (# 4691), p-AKT (# 4060), Cyclin D1(# 2922), Cyclin E1 (# 4129), E-cadherin (# 3195), N- cadherin (# 13116), CDK4 (# 12790), CDK6 (# 3136), and anti-Rabbit IgG-HRP (# 7074). The antibody against vimentin (#ab8979) was purchased from Abcam (Cambridge, USA). The antibody against Gapdh (# 60004-1-lg) and anti-Mouse IgG-HRP (# SA00001-1) were purchased from Proteintech (Rosemont, USA). Selected blots were quantified by using Image J (NIH, USA).
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9

Colitis Model Preparation Protocol

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The preparation protocol of CP referred to our previous method (15 (link)). Antibodies against zonula occludens-1 (ZO-1, A11417), Claudin-1 (A11530), Occludin (A2601) and β-actin (AC026) were purchased from ABclonal (Wuhan, China). Antibodies against mucin-2 (MUC2, GB111965) was purchased from Servicebio (Wuhan, China). DSS for colitis model was purchased from MP Biomedicals (molecular weight: 36–50 kDa, Santa Ana, CA, United States). iNOS (18985-1-AP) and CD206 (60143-1-lg) antibodies for immumohistochemical staining were from Proteintech (Wuhan, China). CD80 (16-10A1) antibody for FACS analysis was from Biolegend (San Diego, CA, United States). Polystyrene latex beads with 2 μm diameter were from Sigma Aldrich (Shanghai, China). Antibodies against P65 (8242T) and p-P65 (3033T) used for western blot were purchased from Cell Signaling Technology while GAPDH (60004-1-lg) was from Proteintech (Wuhan, China). Lipopolysaccharide (LPS, L4391) was from Sigma Aldrich (Shanghai, China).
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10

Protein Extraction and Western Blot Analysis

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Total proteins were extracted from cells or tissues using the radioimmunoprecipitation assay (RIPA) lysis buffer (P0013C, Beyotime, China) containing protease inhibitor cocktail (04693132001, Roche, Mannheim, Germany). Equal protein concentrations were separated on NuPAGE gels (Invitrogen, Carlsbad, CA, USA) and then transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA). Membranes were blocked with 5% non-fat milk in tris-buffered saline solution with 0.1% Tween-20 (TBS-T) solution at room temperature for 2 h and then incubated overnight with anti-SNX17 (10275-1-AP, Proteintech, Rosemont, IL, USA) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (60004-1-lg, Proteintech, Rosemont, IL, USA) antibodies at 4°C. The membranes were subsequently incubated with corresponding secondary antibodies, namely, donkey anti-rabbit immunoglobulin G (IgG) (H + L) (ab186693, Abcam, Cambridge, UK) and donkey anti-mouse IgG (H + L) (ab186699, Abcam, Cambridge, UK) for about 2 h at room temperature and then subjected to detection on the Odyssey IR Imaging System (Li-Cor, Lincoln, Nebraska, USA). Intensity of immunoblots was analyzed using Quantity One (Bio-Rad, Hercules, CA, USA), while relative protein levels were quantified using (ImageJ software).
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