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9 protocols using u0126

1

Modulating MEK1/2 and mTORC1 in NRVMs

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The MEK1/2 inhibitor U0126 (A1337) and mTORC1 agonist MHY1485 (B5853) were purchased from APExBIO (Shanghai, China). NRVMs were treated with 20-µM U0126 or MHY1485 for one hour to inhibit the MEK1/2 pathway or activate the mTORC1 pathway before exposure to 45 mM of HG stimulation for 72 h.
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2

Evaluation of MAPK Signaling Pathway

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U0126 was purchased from APExBIO Technology LLC (A1337, APExBIO). anti-LC3B (catalogue: 3868S), anti-phospho ERK1/2 (4370), anti-ERK1/2 (9102), anti-phospho JNK1/2 (4668), anti-JNK1/2 (9252), anti-phospho p38 (4511), anti-p38 (8690) were obtained from Cell Signaling Technology. Anti-KCNB1 was obtained from abcam (catalogue: ab106513, Abcam, 1:1000).
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3

Modulation of Cell Signaling Pathways

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PC12 or C17.2 cells were seeded in a 6-well plate at the density of 1 × 106 cells/well and incubated for 48 h until reaching 80 % confluence. Then, cells were treated with 10% CM (v/v) from M. smegmatis, or 0.5 ng/ml interferon gamma (IFN-γ) (ab645, abcam, USA), or anti-INFγ (1:1,000 dilution, AF-585-NA, R&D system, USA) for 48 h. For positive control, PC12 cells were treated with 50 ng/ml nerve growth factor (NGF Sigma, USA), and C17.2 cells were treated with 50 ng/ml NGF and 50 ng/ml brain-derived neurotrophic factor (BDNF, Sigma, USA. For screening experiment of signal pathway, cells were treated with CM and different inhibitors (AG490, SP600125, U0126, SB239063, PD98059, H89, Y27632, IWP2, DAPT, BAY 11-7082, LY294002, APExBIO Technology, Houston, USA) for 48 h respectively. The morphology of the cells was observed by microscope (Nikon TE 300).
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4

Chemical Compounds Utilized in Protocol

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Chemical compounds were purchased from Sigma (gemcitabine and temsirolimus), Selleckchem (prexasertib, LY2603618, U0126, and TAK-228), APExBio (VE-822), Thermo Fisher Scientific (puromycin), and MedChemExpress (Torin2, MK-8776, olaparib, and 4EGI-1).
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5

Epithelial-Mesenchymal Transition Induction in U251 Cells

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U251MG, A549, MCF-7 and 293T cells (The Cell Bank of Type Culture Collection of The Chinese Academy of Sciences) were used in the present study. All cell lines were cultured at 37°C with 5% CO2. Ham's F-12K (Kaighn's) Medium (Thermo Fisher Scientific, Inc.) was used to culture A549 cells. U251MG, 293T and MCF-7 cells were cultured in DMEM with high glucose (HyClone; Cytiva). All media were supplemented with 10% FBS (Shanghai ExCell Biology, Inc.) and 100 µg/ml penicillin and streptomycin to make complete medium. Media were changed every other day. The inhibitors and activators used in the present study included an ERK inhibitor (FR180204; 10 µM, 24 h; cat. no. S7524; Selleck Chemicals), a 90 KDa ribosomal protein S6 kinase (RSK) inhibitor (SL0101; 50 µM, 24 h; cat. no. 77307-50-7; Sigma-Aldrich; Merck KGaA), vemurafenib (2 µM, 24 h; cat. no. A3004; APeXBIO Technology LLC), a MEK inhibitor U0126 (2 µM, 24 h; cat. no. 9903; Cell Signaling Technology, Inc.), TGF-β (10 ng/ml, 48 h; cat. no. 8915; Cell Signaling Technology, Inc.) and 20 mM Citrate pH 3.0 (Sterile) (cat. no. 9871; Cell Signaling Technology, Inc.). To examine TGF-β inducing EMT, U251 cells were incubated with 10 ng/ml TGF-β, and the control group was incubated with an equal volume of 20 mM citrate solution buffer, which was the buffer solution for TGF-β.
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6

Osteogenic Differentiation of hPDLSCs

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The hPDLSCs were plated into 48-well plates (4×10
4 cells/well), 24-well plates (6×10
4 cells/well) and 6-well plates (2.5×10
5 cells/well) to perform ALP staining, ARS staining and western blot/qPCR analysis, respectively. The cells were cultured in 10% FBS/α-MEM, and once 80% confluence was achieved, the medium was immediately changed to osteogenic induction medium (10% FBS/α-MEM supplemented with 50 μg/mL ascorbic acid (Sigma-Aldrich), 20 nM dexamethasone and 8 mM β-glycerol phosphate, with or without 1, 5, or 10 μg/mL c-di-AMP (SML1231; Sigma-Aldrich). For signaling pathway investigations, cells were pretreated with 5 μM of the MyD88 inhibitor ST2825 (HY-50937; MedChemExpress, Monmouth Junction, USA), 10 μM of the ERK inhibitor U0126 (A1337; APEXBIO, Houston, USA), 15 μM of the p38 inhibitor SB203580 (A8254; APEXBIO), or 5 μM of the NF-κB inhibitor BAY11-7082 (S1523; Beyotime, Shanghai, China) for 3 h and then incubated with c-di-AMP. Four- and seven-day stimulations were used for ALP staining, qPCR and western blot analysis, and a 14-day induction was used for ARS staining.
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7

Hepatocellular Carcinoma Cell Line Cultivation

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The human HCC cell lines HepG2, BEL-7402, SK-HEP1, SMMC-7721, and normal hepatic cell line LO2 were from China Center for Type Culture Collection and cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (FBS), penicillin (100 U/ml) and streptomycin (100 ng/ml) in a humidified incubator at 37°C with 5% CO2 atmosphere. U0126, LY294002, and Gefitinib were from ApexBio. Anti-TF (ab17375) and Anti-Ki-67 (2724-1) were from Abcam. Anti-pAKT (4060), Anti-AKT (4691), Anti-pERK (4370), and Anti-ERK (4695) antibodies were from Cell Signaling Technologies. Anti-EGFR (SC-03) and Anti-c-Myc (SC-40) antibodies were from Santa Cruz Biotechnology. Anti-β-actin (LK9001T) and Anti-GAPDH (LK9002T) antibodies were from Tianjin Sungene Biotech.
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8

Intracerebroventricular Microinfusion for SAH

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For intracerebroventricular microinfusion, animals were placed in a stereotaxic apparatus (RWD Life Science Co., Ltd, 8001, Shenzhen, China) with the bregma used as the zero point. The left lateral cerebral ventricle was entered by using the following coordinates: anteroposterior, −0.8 mm; lateral, −1.5 mm and vertical, −4.0 mm. Anti-mouse/rat TNF-α antibody (dissolved in PBS; 250 ng/μL, 10 μL per rat; eBioscience™, 14-7423-85, San Diego, CA, USA), U0126 (dissolved in PBS/2% dimethyl sulfoxide, 5 μg/μL, 6 μL per rat; ApexBio Technology LLC, A1337, Houston, TX, USA) or the same volume of vehicle was microinfused into the left lateral cerebral ventricle 30 min before SAH. The infusions were performed at a rate of 0.5 μL/min using a microinfusion pump, and injection cannulas were left for an additional 2 min. Phorbol-12-myristate-13-acetate (PMA, dissolved in PBS/1% dimethyl sulfoxide, 100 μg/mL, 500 μg/kg; Sigma, P1585, St Louis, MO, USA) or the same volume of vehicle was injected intraperitoneally immediately after the microinjection of anti-TNF-α antibody.
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9

Fatty Acid-Induced NAFLD Model

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L02 and HepG2 cells were cultured in Dulbecco’s minimal eagle medium containing 10% fetal bovine serum at 37°C in a 5% CO2 humidified atmosphere. The in vitro model of NAFLD was induced by treatment with a mixture of 1 mM free fatty acids (FFA; oleic acid: palmitic acid = 2:1) containing 1% FFA-free bovine serum albumin (BSA) for 24 h as described by Gómez-Lechón et al.16 (link) Cells were transfected with RASAL2 overexpression plasmid (GV492-RASAL2: GeneChem, Shanghai, China; pNTAP-RASAL2: provided by Professor Wu Xiaohui of Fudan University) or siRNAs (siRASAL2: forward 5′-GCAGGACAGUUCAACCUAATT-3′; siTET1: forward 5′-CCUCCAGUAAUGGCUAUAATT-3′; Scrambled: forward 5′-UUCUCCGAACGUGUCACGUTT-3′; Biotend, Shanghai, China), followed by FFA treatment with or without AKT inhibitor triciribine and MEK inhibitor U0126 (both from Apexbio, Houston, TX, USA) for 24 h.
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