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18 protocols using ab200834

1

Immunocytochemistry of Stem Cell Markers

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Cells were cultured on a glass slide and fixed in 4% paraformaldehyde for 15 min. The cells were permeabilized with 0.1% Triton X-100 for 10 min, and non-specific antibody interaction sites were then blocked for 15 min. Next, the cells were incubated at 4 °C overnight with primary antibodies, Nanog (ab109250, Abcam, USA), Oct4 (ab200834, Abcam, USA), SSEA4 (ab16287, Abcam, USA), and TRA-1-81 (ab16288, Abcam, USA), to identify ESCs and follicle stimulating hormone receptor (FSHR, 22665-1-AP, Proteintech, China) to identify granulosa cells. On day 2, the cells were incubated with a secondary antibody in a darkroom for 1 h. Finally, the cell nuclei were labeled with Hoechst 33324 for 1 min. After that, the slides were observed and imaged using a fluorescence microscope (DMI 6000, Leica Micro systems, Buffalo Grove, IL, USA).
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2

Evaluating Stem Cell Markers via Western Blot

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Western blot was carried out as previously reported (Wang et al., 2012 (link)). The anti-ING4 (ab108621, 1:1,000; Abcam, United States), anti-CD44 (ab189524, 1:1,000, Abcam, United States), anti-OCT4 (ab200834, 1:1,000, Abcam, United States), anti-MYC (ab32072, 1:1,000, Abcam, United States), anti-NANOG (ab109250, 1:1,000, Abcam, United States), anti-DUSP4 (ab216576, 1:1,000, Abcam, United States), anti-p-p38 MAPK (#4511, 1:1,000, CST, United States), anti-p38 MAPK (#8690, 1:1,000, CST, United States), anti-p-Erk1/2 (#4370, 1:1,000, CST, United States), and anti-Erk1/2 (#4695, 1:1,000, CST, United States) were used for primary antibody incubation at 4°C overnight. The anti-α-tubulin (Cat No.: 11224-1-AP, 1:1,000; Proteintech, China) was used for the protein loading control. Each blot was repeated three times.
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3

Western Blot Analysis of Stem Cell Markers

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Total proteins of ESCA cells was extracted by radio-immunoprecipitation assay (RIPA) lysis buffer (Beyotime) [32 (link)]. Subsequently, equal amounts of protein were transferred into polyvinylidene difluoride (PVDF) membranes after separation by 10% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS-PAGE). The membranes were blocked with 5% nonfat milk and then incubated with primary antibodies against CD133 (ab222782, 1:2000, Abcam), Nanog (ab109250, 1:1000, Abcam), Oct4 (ab200834, 1:10,000, Abcam), Sox2 (ab92494, 1:1000, Abcam), ALDH1 (ab52492, 1:2000, Abcam), PYGL (ab198268, 1:1000, Abcam) and GAPDH (ab9483, 1:1000, Abcam) overnight at 4°C. GAPDH was regarded as the internal reference. Subsequently, the membranes were washed with Tris-buffered saline Tween-20 (TBST), followed by incubation with horseradish peroxidase (HRP)‐conjugated secondary antibodies for 1 h at room temperature. Finally, the enhanced chemiluminescence (ECL) kits (Abcam) were used to visualize the protein bands.
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4

Antibody Validation for Stem Cell Markers

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The following antibodies were used for western blotting: rabbit monoclonal anti-CD24 (1:500, catalog number ab179821, Abcam, MA, USA), rabbit monoclonal anti-CD44 (1:500, catalog number ab189524, Abcam), rabbit recombinant multiclonal anti-CD133 (1:800, catalog number ab278053, Abcam), mouse monoclonal anti-Nanog (1:1000, catalog number ab173368, Abcam), rabbit monoclonal anti-OCT4 (1:500, catalog number ab200834, Abcam), mouse monoclonal anti-SOX2 (1:1000, catalog number ab79351, Abcam), rabbit polyclonal anti-DLG5 (1:1000, catalog number ab231283, Abcam), rabbit polyclonal anti-PRDM16 (1:1000, catalog number ab106410, Abcam), mouse monoclonal anti-ErbB-2 (1:500, catalog number sc-33684, Santa Cruz Biotechnology, CA, USA), and mouse monoclonal anti-β-actin (1:1000, catalog number A5441, Sigma-Aldrich, MO, USA). Other primary antibodies and secondary antibodies and experimental procedures for immunoblotting are provided in the supplementary experimental procedures10 (link).
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5

Immunocytochemistry of Stem Cell Markers

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Cells were cultured on a glass slide and fixed in 4% paraformaldehyde for 15 min. The cells were permeabilized with 0.1% Triton X-100 for 10 min, and non-specific antibody interaction sites were then blocked for 15 min. Next, the cells were incubated at 4 °C overnight with primary antibodies, Nanog (ab109250, Abcam, USA), Oct4 (ab200834, Abcam, USA), SSEA4 (ab16287, Abcam, USA), and TRA-1-81 (ab16288, Abcam, USA), to identify ESCs and follicle stimulating hormone receptor (FSHR, 22665-1-AP, Proteintech, China) to identify granulosa cells. On day 2, the cells were incubated with a secondary antibody in a darkroom for 1 h. Finally, the cell nuclei were labeled with Hoechst 33324 for 1 min. After that, the slides were observed and imaged using a fluorescence microscope (DMI 6000, Leica Micro systems, Buffalo Grove, IL, USA).
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6

Comprehensive Protein Expression Analysis in Stem Cell Research

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Antibodies against octamer-binding transcription factor 4 (1:1000, Oct-4; ab200834, abcam), Brachyury (1:1000, sc-166962, Santa Cruz Biotechnology), GATA-binding protein 4 (1:1000, GATA4; sc-25310, Santa Cruz Biotechnology), SRY box transcription factor 17 (1:1000, Sox17; AF1924, R&D system), neuronal differentiation 1 (1:1000, NeuroD1; ab205300, abcam), XRCC5 (1:2000, AF5819, R&D system), IGF2BP1 (1:1000, ab184305, abcam), RBBP4 (1:1000, MAB7416, R&D system), NPM1 (1:1000, sc-271737, Santa Cruz Biotechnology), PCNA (1:1000, sc-56, Santa Cruz Biotechnology), GNAI2 (1:1000, ab137050, abcam), PHB2 (1:1000, sc-133084, Santa Cruz Biotechnology), LAMB1 (1:1000, sc-17810, Santa Cruz Biotechnology), LAMC1 (1:1000, sc-17751, Santa Cruz Biotechnology), β-catenin (1:1000, sc-7963, Santa Cruz Biotechnology), AKT (1:2000, #4691, Cell Signaling Technology), Jun amino-terminal kinases (JNK) (1:1000, #9252, Cell Signaling Technology), phosphorylated (p)-JNK (1:1000, #9255, Cell Signaling Technology), p38 (1:1000, sc-81621, Santa Cruz Biotechnology), p-p38 (1:1000, #9216, Cell Signaling Technology), TGF-β (1:1000, #3711, Cell Signaling Technology), CTGF (1:1000, sc-385970, Santa Cruz Biotechnology), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; (1:3000, sc-47724, Santa Cruz Biotechnology) were employed for the western blot analysis.
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7

Protein Expression in Cervical Cancer Cells

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The proteins of differently treated cervical cancer cells were extracted with RIPA Lysis Buffer (PP110; Protein Biotechnology Co., Ltd, China) according to the manufacturer's instruction. Then, the concentration of the proteins was determined using a BCA protein assay kit (PP202; Protein Biotechnology Co., Ltd, China). Subsequently, 30 µg proteins in each group were separated by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The gels were then transferred onto a polyvinylidene fluoride (PVDF) membrane. The membrane was incubated in Tris-buffered saline containing 0.1% Tween-20 and 5% nonfat milk for 1 h. Then, the PVDF membrane was incubated overnight with primary antibodies against NANOG (ab203919; Abcam, USA), OCT4 (ab200834; Abcam, USA), CD133 (ab278053; Abcam, USA), SOX2 (ab92494; Abcam, USA), and β-actin (ab8227; Abcam, USA). Then, the membrane was incubated with HRP-conjugated secondary antibody (ab205718; Abcam, USA) for 2 h at room temperature. The bands of individual proteins were visualized using a chemiluminescence (ECL) kit (PP404; Protein Biotechnology Co., Ltd., China).
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8

Protein Expression Analysis in LUSC Cells

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Proteins were isolated from LUSC cells and tissues using RIPA buffer (Sigma) and then separated using 10% SDS‐PAGE and transferred to PVDF membranes (Millipore). After being blocked with 5% non‐fat milk, the membranes were probed overnight with, anti‐SOX2 (ab97959, Abcam), anti‐OCT4 (ab200834), anti‐Nanog (ab109250), anti‐PTN (ab79411), and anti‐GAPDH (ab8245, Abcam) antibodies at a dilution of 1:1000. Following 3 times washing, the cells were incubated with HRP anti‐rabbit IgG (ab6721, Abcam, 1:2000). Finally, bands were observed with the enhanced chemiluminescence system (ECL, ThermoFisher).
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9

Nanoparticle Tumor CSC Targeting

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The in vivo access of CFN and M-CFN to the CSC fractions in tumors was measured in 4T1-induced tumor models. DiI-labeled CFN and M-CFN were intravenously administered to tumor-bearing mice at 1.0 mg/kg DiI. At 8.0 h postinjection, the tumor tissues were removed, frozen and sectioned at 10 µm (Leica 1950, Germany). The tumor sections were stained with primary antibodies against ALDH1A1 (Abcam, ab52492, 1:100), SOX2 (Abcam, ab97959, 1:1000) and Oct4 (Abcam, ab200834, 1:50), followed by Alexa Fluor 488-labeled IgG (H + L) secondary antibody (Beyotime, Jiangsu, China). In contrast, these sections were stained with DAPI for CLSM detection. The access of nanovehicles to these CSC fractions were denoted as the overlap of the red fluorescence signals of nanovehicles and the green signals of typical markers of CSCs in tumor sections. These images were analyzed using Image-Pro Analyzer 3D 7.0 (Media Cybernetics, MD, USA) to monitor the colocalization of nanovehicles with CSCs in tumors and were analyzed using ImageJ software to evaluate the access of nanovehicles to CSC fractions in tumors.
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10

Protein Expression Analysis via Western Blotting

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Total protein was extracted using the RIPA lysis buffer (Beyotime), and was separated by SDS‐PAGE gels and then transferred onto the PVDF membrane (Merck Millipore). The membranes were blocked with 5% nonfat milk, and then incubated with primary antibodies overnight at 4°C and goat anti‐rabbit secondary antibody (ab6721; 1:5 000; Abcam) at room temperature for 1 h. Finally, images were developed with the Immuno Star LD (Wako Pure Chemical). The antibodies were listed as follows: anti‐RAB22A (ab137093; 1:1 000; Abcam), anti‐Bax (ab32503; 1:1000; Abcam), anti‐Bcl‐2 (ab32124; 1:500; Abcam), OCT4 (ab200834; 1:10000; Abcam), NANOG (ab109250; 1:2 000; Abcam), CD133 (ab222782; 1:2000; Abcam) and anti‐β‐actin (ab8227; 1:1 000; Abcam).
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