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4 protocols using ab134055

1

Protein Extraction and Western Blot Analysis

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Total protein samples were extracted using a radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology, Nantong, China) containing 1% protease inhibitor (Cell Signaling Technology). A BCA Protein Assay Kit (Beyotime Biotechnology, Nantong, China) was used to detect protein concentrations. Total protein samples (20 μg) were separated using 10% sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS‐PAGE) and subsequently transferred to polyvinylidene difluoride (PVDF) membranes. The membranes were incubated with primary antibodies specific for anti‐FOXP1 (ab134055, 1:1000), anti‐OCN (ab93876, 1:500), anti‐RUNX2 (ab23981, 1 μg/mL) and anti‐GAPDH (ab9485, 1:2500) (Abcam, Cambridge, UK, USA) at 4°C overnight. They were then incubated with horseradish peroxidase‐labelled secondary antibodies (Santa Cruz, Dallas, TX, USA) for 2 hours at room temperature. An enhanced chemiluminescence (ECL) kit (Solarbio, China) was used to visualize protein bands.
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2

Protein Quantification and Analysis Protocol

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The total protein in tissues or cells was extracted by RIPA lysis (C0481, Sigma Aldrich, USA), lysed at 4 ℃ for 15 min, and centrifuged at 15,000 rpm for 15 min. The concentration was determined by bicinchoninic acid method (23227, Thermo, USA). The samples were subjected to gel electrophoresis, then moved into polyvinylidene fluoride membranes, which were blocked with 5% skim milk for 1 h, and incubated overnight with the primary antibodies (all from Abcam) against G9a (1:500, ab183889), FOXP1 (1:1,000, ab134055), GAPDH (1:5,000, ab8245). The next day, the membranes were rinsed with tris-buffered saline-tween containing 0.1% tween 20 and probed with secondary antibody IgG H&L-conjugated horseradish peroxidase (1:20,000, ab205718) for 1.5 h. The protein was developed by adding developer (NCI4106, pierce, Rockford, IL, USA). ImageJ 1.48u software (Bio-Rad, Hercules, CA, USA) was used for protein quantitative analysis, and the ratio of gray value of each protein to gray value of GAPDH was used for protein quantitative analysis. Each experiment was repeated three times.
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3

Western Blot Analysis of Protein Expression

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Total proteins were isolated, and the concentration was determined using BCA method. After proteins was separated by using 10%–12% SDS-PAGE, proteins were transferred to PVDF membranes (Millipore, Bedford, MA, USA). The 1% BSA in TBS buffer was used to block the membranes and cultivated at 4°C overnight with primary antibodies against FOXP1 (1:5,000, ab134055, Abcam, Cambridge, UK), microtubule-associated protein 1A/1B-light chain 3 (LC3) (1:3,000, ab51520), P62 (1:1,000, ab207305), B-cell lymphoma 2 (Bcl-2) (1:1,000, ab59348), Bcl-2 associated X (Bax) (1:5,000, ab32503), AKT (1:500, ab8805), phospho (p)-AKT (1:1,000, ab38449), mTOR (1:10,000, ab134903), GAPDH (1:1,000, ab8245), β-actin (1:1,000, ab8226). Then incubating with the corresponding secondary antibodies. The protein signaling was visualized by ECL reagent. GAPDH and β-actin as loading controls and all antibodies were purchased from Abcam.
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4

ChIP-seq analysis of FOXP1 in HUVECs

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A ChIP assay kit (Beyotime Institute of Biotechnology) was used to perform the ChIP-seq analysis, according to the manufacturer's instructions. Briefly, HUVECs were fixed with 1% formaldehyde for 10 min at room temperature. Next, 1x106 HUVECs were collected via centrifugation at 300 x g for 3 min at 25˚C and washed twice with phosphate-buffered saline. Subsequently, HUVECs were lysed RIPA buffer (Cell Signaling Technology, Inc.) and sonicated for 30 min. The sonicated cell lysates (2 µl) were immuno-precipitated with 4 µg antibodies against FOXP1 (1:800; cat. no. ab134055; Abcam) or IgG (negative control, 1:800; cat. no. ab109489; Abcam) at 4 ˚C overnight. The next day, the samples were conjugated with Protein A agarose (Invitrogen; Thermo Fisher Scientific, Inc.) for 6 h at 4˚C. Finally, the immunoprecipitated DNAs were purified with a ChIP DNA purification kit (Beyotime Institute of Biotechnology) and amplified by virtue of qPCR as aforementioned. RT-qPCR was applied to analyze the enriched DNA. The primers used for the ChIP assay were the same as those used in RT-qPCR.
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