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6 protocols using hc pl apo cs2 40x 1.30 oil

1

Endothelial Monolayer Formation from kMSCs

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Kidney mesenchymal stromal cells (kMSCs, 2 × 104 cells) were seeded in 1% gelatin coated 96 well plate. After 4 h when all the cells adhered to the plate, HUVECs (2 × 104 cells) were added on top of the kMSCs, cultured in EGM2 (Lonza, Basel, Switzerland) medium. The cells were cultured for 2 days until a confluent endothelial monolayer formed. Next, cells were fixed with 4% PFA and 0.2% Triton-X100 in PBS for 10 min at room temperature, washed with PBS, and blocked for 1 h at room temperature in 3% normal goat serum and 2% BSA in PBS. Primary monoclonal Mouse Anti-Human VE cadherin (CD144, 55-7H1, BD Biosciences, San Diego, CA, USA) and phalloidin-TRITC (P1951, Sigma, Zwijndrecht, the Netherlands) were incubated overnight at 4 °C, followed by an appropriate secondary antibody and Hoechst 33528 for 1 h, all in blocking buffer. Cells were examined using a LEICA TCS SP8 X WLL (Leica, Rijswijk, The Netherlands) and a 60x objective (HC PL APO CS2 40x/1.30 OIL, Leica). Sequential 16-bit confocal images (xyz dimensions, 0.142 × 0.142 × 0.3 μm) were recorded using LAS-X Image software (Leica) and analyzed with ImageJ. The stable linear adherence junctions were quantified as ratio over total junction length [23 (link),24 (link)].
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2

Immunofluorescence Staining of Airway Epithelial Cells

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HAE cells grown on Transwell filters were incubated with 20 µl of DMEM ± 100 µM specified peptides (Fig. 4a) on day 28 of establishing ALI. Then, 24 h later, cells were fixed for 20 min in 2% paraformaldehyde in DPBS. Cells were then permeabilized for 10 min with 0.2% saponin and 10% FBS (Thermo Fisher Scientific) in DPBS. Cells were washed twice with DPBS and stained with anti-MUC5AC (45M1, MA1-21907, Thermo Fisher Scientific) antibodies diluted 1:100 in DPBS, 0.2% saponin and 10% FBS overnight at 4 °C. Subsequently, cells were washed twice with DPBS and incubated for 1 h at room temperature in DPBS, 0.2% saponin and 10% FBS containing AlexaFluor-488-labelled anti-mouse secondary antibodies (1:500; Thermo Fisher Scientific) and DAPI (1:5,000; Thermo Fisher Scientific). Images were taken on an inverted confocal microscope (Leica TCS SP5) using a ×40 lens (Leica HC PL APO CS2 40x1.30 OIL). Images for the blue (DAPI), green (AlexaFluor 488) and red (Cy3) channels were taken in sequential mode using appropriate excitation and emission settings.
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3

3D Reconstruction of Mitochondria using Confocal Microscopy

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Confocal images were acquired on a Leica TCS SP8 System equipped with a Leica DMi8 inverted microscope, using a Leica HC PL APO CS2 40X/1.30 oil immersion objective. Samples were illuminated with 405 nm laser line for the detection of DAPI signal and 561 nm tuned with light laser for the detection of both Cy3 signal and DIC image. The acquisition software used was the Leica Application Suite X, ver. 3.5.2.18963 (Leica, Wetzlar, Germany). An image format of 1024 × 1024 pixel was used and both optical zoom ×1 and ×2 were used for the samples acquisition.
For three-dimensional reconstruction of mitochondria, 0.5 μm thick Z-stacks were acquired using a Leica TCS SP8 System equipped with a Leica DMi8 inverted microscope; three-dimensional projections were generated using the Leica LAS X software.
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4

Proximity Ligation Assay for Protein Interactions

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Cells were plated at 25,000 cells/cm2 overnight on round 12 mm No. 1.5 coverslips in a 24-well plate overnight, treated with or without 0.5 µM AP for 24 h, and fixed–stained as with immunofluorescence up to the primary antibody step (Supplementary Data 7). Proximity ligation was performed with the Duolink In Situ Orange Starter Kit Mouse/Rabbit (Millipore Sigma, DUO92102-1KT) according to the manufacturer’s recommendation. Samples were imaged in photon counting mode on a Leica STELLARIS 8 confocal microscope with a 40x objective (HC PL APO CS2 40x/1.30 OIL), 142 nm step size, 0.425 µs pixel dwell time per imaging track, 405 nm laser (1% power) excitation and 420–566 nm bandpass emission for DAPI, and 561 nm laser (0.3% power) excitation and 566–643 nm bandpass emission for Cy3. Eleven optical sections of 1 µm step size were collected from each image field and maximum-intensity projected for analysis.
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5

Vascular Tube Formation Assay

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Kidney mesenchymal stromal cells (kMSCs, 2 × 104 cells) and hMVECs (1 × 104 cells) were mixed and seeded in 1% gelatin coated 96 well plate, cultured in EC-SFM medium (Gibco, Zwijndrecht, the Netherlands) with 1% platelet poor plasma derived serum, 30 ng/mL vascular endothelial growth factor 165 (VEGF-165) (R&D, Minneapolis, MN, USA), and 20 ng/ mL fibroblast growth factor-basic (bFGF, Miltenyi, Bergisch Gladbach, Germany). Cells were pelleted by centrifugation for 30 s at 300× g. The cells were cultured for 7 days until vascular tubes formed. Next, cells were fixed with 4% PFA and 0.2% Triton-X100 in PBS for 10 min at room temperature, washed with PBS, and blocked for 1 h at room temperature in 5% BSA in PBS. Cells were incubated overnight at 4 °C with primary mouse anti-human CD31 (555445, BD Biosciences, San Diego, CA, USA) and alpha-SMA (C6198, Sigma, Zwijndrecht, the Netherlands), followed by an appropriate secondary antibodies and Hoechst 33528 for 1 h, all in blocking buffer. Cells were examined using a LEICA TCS SP8 X WLL (Leica, Rijswijk, The Netherlands) and a 60× objective (HC PL APO CS2 40x/1.30 OIL, Leica). Sequential 16-bit confocal images (xyz dimensions, 0.142 × 0.142 × 0.3 μm) were recorded using LAS-X Image software (Leica) and analyzed with ImageJ. Both vascular area and vascular branches were quantified.
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6

Quantification of 17-day-old Murine Brain Volume

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Brains of 17-day-old animals raised at 29 °C were dissected and fixed in 4% paraformaldehyde in PBS for 1.5 h at RT. Images were acquired using a Leica TCS SP8 confocal laser scanning microscope, using the objective HC PL APO CS2 40x/1.30 OIL, numerical aperture 1.3, pinhole 999.61mAU, 600 Hz, 2048×2048 resolution and z slice distance of 0.3 µm. 30 µm stacks were scanned. Images were 3D reconstructed using Bitplane Imaris. An area of 512×512 pixels was selected, reconstruction was carried out for 13,5 µm stacks starting at 7,5 µm and ending at 21 µm of respective 30 µm stacks. Parameters used: smoothening active and set to 0.189, local background subtraction active and set to 0.5 µm, threshold set to 4. The volume data (total volume and volume units) was extracted and quantified. Wilcoxon rank-sum test was used for statistical analysis. N indicates the number of independent experiments, while n indicates the number of individual animals. Box plots: the boundary of the box indicate the 25th and 75th percentile, the line within the box marks the median. Whiskers (error bars) above and below the box indicate the 90th and 10th percentiles. Dots indicate outliers.
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