The largest database of trusted experimental protocols

20 protocols using varioskan flash instrument

1

Cell Proliferation and Colony Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell proliferation was assessed using the xCELLigence real-time analysis system (ACEA Biosciences). Cells were plated at 5000/well and proliferation was followed for 100 hours. For ATP analysis, 5000 cells/well were plated in 96-well plates. Twenty-four hours later, metabolic inhibitors were added to the medium. After 2 hours of incubation, ATP was analyzed with an ATPlite Luminescence ATP Detection Assay System (Perkin Elmer), according to the manufacturer’s instructions. Assay medium was transferred to white-welled plates and analyzed with a Varioskan Flash instrument (Thermo Scientific). After background subtraction, the means of technical replicates for each independent experiment were first calculated, and then the data were presented as means ± SEM for three independent experiments. Colony-forming assays were performed by plating single cells at low density for 10 days before colonies were counted. Where the effects of siRNA-mediated knockdown on colony-forming is shown, the mean of triplicate cell plates was first calculated and then the data were presented as means ± SEM from independent experiments.
+ Open protocol
+ Expand
2

Quantifying Protein-Protein Interactions using NanoBRET

Check if the same lab product or an alternative is used in the 5 most similar protocols
The NanoBRET™ assay was performed in white 96-well plates, according to the manufacturers’ protocols (Promega). Briefly, both NanoLuc® and HaloTag® fusion vectors were transfected into HEK-293 cells. After a 24 h incubation, the cells were seeded into white 96-well plates with and without NanoBRET™ HaloTag® 618 Ligand. Following a 24 h incubation, NanoBRET NanoGlo substrate (Promega) was added (0.1 μL/well) and readings were performed for 0.3 s using NanoLuc® emission (460 nm) to measure the donor signal and NanoBRET™ ligand emission (620 nm) for the acceptor signal using a Varioskan Flash instrument (Thermo Scientific). BRET was calculated as the ratio of the emission at 620 nm/460 nm. Each experiment was performed at least six times.
+ Open protocol
+ Expand
3

Anticancer Effects of OA-MVLs on HepG2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cell proliferation inhibitory effect of OA-MVLs on HepG2 cells was evaluated by MTT assay. Briefly, cells were adjusted to a density of 4×105 cells/mL and seeded into 96-well plates (100 μL/well), and cultured for 48 hours at 37°C. Then, the cells were treated with OA-MVLs at different concentrations such as 10, 20, 40, 80, 120, 160, 200, 220, 240, 250, 260, 270, 280, 290, 300, 310, 320, 330, and 350 μmol/L, and concentrations of OA solution were maintained consistent with those of OA-MVLs.9 (link) After incubation for 24 hours, 20 μL of MTT reagent (5 mg/mL) was added to each well, and the plate was incubated for another 4 hours at 37°C in the dark. The liquid was then removed, and the remaining crystals were solubilized with 150 μL of dimethyl sulfoxide. The plate was incubated for an additional 10 minutes at 37°C with gentle shaking before the measurement of absorbance at 490 nm using Varioskan Flash instrument (Thermo Fisher Scientific Inc). The rate of cell proliferation inhibition was calculated by the following formula: Inhibition Rate (%) = (1 − Asample/Acontrol) ×100. Each assay was carried out in triplicate with the empty wells as the negative control and the well containing cell culture medium alone as the blank control.
+ Open protocol
+ Expand
4

Inducible Expression of mobM Gene

Check if the same lab product or an alternative is used in the 5 most similar protocols

Escherichia coli JM109(DE3) cells carrying the indicated plasmids were grown to an OD600 of 0.4. Then, IPTG (1 mM final concentration) was added to the cultures to induce the expression of the mobM gene located on plasmid pLGM2. As controls, cultures without Isopropyl-β-D-1-Thyogalactopyranoside (IPTG) were used. β-Galactosidase activity was measured as reported (45 (link)) using a Thermo Scientific Varioskan Flash instrument. All experiments were independently repeated five times (n = 5), and β-galactosidase activity was calculated in Miller units (MU) (59 ).
+ Open protocol
+ Expand
5

Cell Proliferation Assays with CCK-8 and IncuCyte

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell proliferation was assessed with Cell Counting Kit‐8 (CCK‐8) (Dojindo Lab, Japan) according to the manufacturer’s instructions. In brief, a total of 5000 cells/well were seeded into 96‐well plates, and then, cells were cultured in the indicated conditions for 72h, and the proliferation index at 450 nm absorbance was measured by a Thermo Scientific Varioskan Flash instrument after incubation with 10 µl CCK‐8 solution for 2 h at 37 °C. Cell proliferation was also assessed via IncuCyte ZOOM (Essen BioScience). A total of 5000 cells/well were seeded into 96‐well plates and were automatically monitored and recorded every 2 h by the IncuCyte ZOOM for 72h.
+ Open protocol
+ Expand
6

Quantifying Mitochondrial Permeability Transition Pore Opening

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells cultured in 24‐well plate were collected and incubated with calcein‐AM (2 μM) in a medium containing 120 mM NaCl, 5.0 mM KCl, 2.0 mM CaCl2, 20 mM HEPES, and 15 mM glucose (pH 7.4) at 37°C for 30 min, which causes penetration into the cytoplasm and mitochondria. The fluorescence from cytosolic dye was quenched for another 30 min by the addition of CoCl2 (1 mM). After washing cells three times, half of the cells were left as is, and the other half were treated for another 30 min with 500 μM CaCl2, Ca2+ ionophore calcimycin (5 μM), CATR (1 μM), or BKA (5 μM) to trigger or inhibit mPTP opening. Then, the calcein fluorescence was detected by the Varioskan flash instrument (Thermo Scientific, USA) and the decreased percentage of initial calcein fluorescence could be accepted as the mPTP opening level.
+ Open protocol
+ Expand
7

Evaluating Anti-Proliferative Effects of UA-PMs

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cell proliferation inhibitory effect of UA-PMs was performed against human hepatocellular carcinoma cell line HepG2 and human normal liver cell line L-02 by MTT assay. All cells were seeded into 96-well cell plates with 1 × 104 cells/well and incubated for 24 h until reaching confluence. Then, they were treated with free UA and UA-PMs at different concentration of 2.5, 5, 10, 20, 30, 40, 50, 60, 80, 100 μmol/L using DMEM medium as negative control and 5-FU as positive control. After incubation for 24 h, 20 μL of MTT solution (5 mg/mL) was added and incubated for another 4 h in the dark. The supernatant medium was removed and the left MTT-formazan crystals were dissolved in 150 mL DMSO. Then the plate was incubated for 10 min at 37 °C with gentle shaking before determining the absorbance at 490 nm using Varioskan Flash instrument (Thermo Fisher, Waltham, MA, USA). The inhibitory rate of cell proliferation was obtained through the following formula as: Inhibition Rate (%) = (1 - Asample / Acontrol) × 100%. Each assay was conducted in triplicate.
+ Open protocol
+ Expand
8

Bacopaside II Inhibits Aquaporin 1 Permeability

Check if the same lab product or an alternative is used in the 5 most similar protocols
IEB was pretreated with or without the inhibitor of AQP1 channel, 10 μM bacopaside II, for 1 h, which was followed by the addition of 4 kDa FITC-conjugated dextran (1 mg/mL) to the upper chamber of Transwells. After 2 h, 4 h or 6 h incubation, 100 μL of sample was collected from the lower chamber to quantify the amount of FITC–dextran penetrated from the upper to lower chamber. Meanwhile, 100 μL DMEM was supplemented into the lower chamber. Fluorescence was read using a VARIOSKAN FLASH instrument (Thermo Scientific, Waltham, MA, USA) that detects the fluorescence at excitation and emission wavelengths of 495 nm and 519 nm, respectively. The values of the samples were expressed as fold increase in the fluorescence intensity in mock-infection.
+ Open protocol
+ Expand
9

Quantifying Macrophage Phagocytosis of Opsonized Bacteria

Check if the same lab product or an alternative is used in the 5 most similar protocols
Micrococcus (M.) luteus cells were labeled with RITC and opsonized by human complement (1:4) for 30 min at 37 °C and washed twice with PBS. Labeled bacteria were suspended in DMEM and 5 × 107 bacteria were added to 2 × 105 macrophages for 60 min on 24 well plates. Ingestion was stopped by adding 100 μl NEM (2 mg/ml), washed twice by PBS (pH = 7.0), non-ingested bacteria removed by lysozyme treatment [Vray et al., 1980 (link); Hrabák et al., 2008 (link)]. Finally, cells were solubilized in 1 ml 1 % Igepal detergent, fluorescence measured in a Thermo Varioskan Flash instrument, using 545 nm excitation and 590 nm emission wavelengths. The phagocytic index can be calculated by comparing the values to the fluorescence of standard bacterial suspensions, and is given as millions of ingested bacteria per 105 macrophages.
+ Open protocol
+ Expand
10

Granulosa Layer Protein Isolation and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The granulosa layers of F5 were used for protein isolation with the BSP003 kit (Sangon Biotech Co., Ltd, Shanghai, China). Protein concentration was measured with the Pierce bicinchoninic acid (BCA) Protein Assay Kit (Thermo Scientific Pierce, Rockford, IL, USA) and Varioskan Flash instrument (Thermo Fisher Scientific, Rockford, IL, USA). A total of 30 μg protein was resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. After blocking with 5% non-fat milk in 1× Tris-Buffered Saline with Tween (TBST) buffer for 1 h at room temperature, membranes were incubated with rabbit anti-chicken (ERα, ERβ, PR-A, and PR-B) monoclonal antibodies (Abcom, Cambridge, UK, 1:1000) and rabbit anti-chicken β-actin monoclonal antibody (Abcom, Cambridge, UK, 1:1000) overnight at 4°C [27 (link)–29 (link)]. The blots were then washed in 1× TBST buffer and probed with goat-anti-rabbit horseradish peroxidase (HRP)-conjugated IgG secondary antibody (diluted 1:2000 in 1× TBST; Abcom, Cambridge, UK) for 1 h at room temperature. Binding was visualized with enhanced chemiluminescence (ECL) reagent (Beyotime Institute of Biotechnology, Jiangsu, China) using a ChemiDoc XRS instrument (Bio-Rad, Inc., Richmond, CA, USA). Quantity One Software (Bio-Rad, Inc., Richmond, CA, USA) was used for densitometric analysis.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!