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3 protocols using sc 57351

1

Comprehensive Antibody Validation Protocol

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Antibodies against Gbp2 (ab203238), GFAP (ab53554, ab7260), LCN2 (ab63929), LRP1 (ab92544), MAG (ab89780), MBP (ab40390), NF200 (ab7795), PLP (ab28486) and S100A10 (ab76472) were purchased from Abcam, UK; antibody against CD31 (550274) was purchased from BD Biosciences, USA; antibodies against GFAP (3670S), GFP (2955S, 2956S), p38 (9212S), pp38 (4511S) and β-actin (8457S) were purchased from Cell Signaling Technology, USA; antibodies against CC1 (OP80), dMBP (AB5864) and Olig2 (AB9610) were purchased from Millipore, USA; antibodies against C3d (AF2655), Galectin3 (AF1197), LAMP1 (AF4320) and LCN2 (AF1857) were purchased from R&D Systems, USA; antibodies against Gbp2 (sc-166960) and LRP1 (sc-57351) were purchased from Santa Cruz Biotechnology, USA; antibody against pLRP1 (PA5-101013) was purchased from Thermo Fisher, USA; antibody against Iba1 (019-19741) was purchased from Wako, Japan. All antibodies were used at a dilution of 1:50 to 1:2000 for immunofluorescence and 1:800 to 1:5000 for immunoblotting according to the manufacturer’s instructions. Alexa Fluor 488, 594 and 647 conjugated secondary antibodies were purchased from Jackson, USA.
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2

LRP1 Expression Analysis in MVNs

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Expression analysis of LRP1 was performed using a Proteinsimple automatic western assay as previously described (73) (74) (74)after fixation with PFA. Devices was separated from the glass coverslip using a razor blade, and different regions of the MVNs in fibrin gel were collected: 4 ROIs in the control MVNs without GBM spheroids, and in the MVNs with GBM spheroids, 2 ROIs near and 2 ROIs far from the spheroid.; n=5-6 devices were employed for each condition. Samples were incubated in lysis buffer comprising 10mL of 1X buffer (9803S, Cell Signaling Technologies), 1 µL Benzonase Nuclease (E8263, Millipore Sigma), one tablet of protease inhibitor cocktail (11836170001, Millipore Sigma), and stored at -80 °C. LRP1 signal (sc-57351, Santa Cruz Biotechnology) was normalized to CD31 (ab32457, Abcam) or β-actin (926-42210, Li-Cor) using Compass software v5.0. The output of this automatic western assay is not a standard blot but rather a chemiluminescence spectrum; representative uncropped raw data for LRP1 signal in one device is included in Figure S1.
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3

Multimodal Immunofluorescence Imaging of Cellular Markers

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Devices were fixed, permeabilized, blocked prior to staining. Protein visualization was achieved by staining the fixed devices with anti-CD31 (ab3245, Abcam), anti-LRP1 (sc-57351, Santa Cruz Biotechnology), and anti-ZO-1 (61-7300, ThermoFisher Scientific) at 1:200 in PBS, overnight at 4C on a shaker. Secondary antibodies were used at 1:200 in PBS (568 goat anti-rabbit A-11011, or 633 goat anti-mouse A-21052, Invitrogen) and DAPI (D1306, Invitrogen) at 1:1000. Additional staining details are in the supplemental methods. Images were acquired with a confocal laser scanning microscope (FV-1200, Olympus).
For in vivo samples, brains were formalin fixed and paraffin embedded before staining with cleaved caspase-3 (CC3 Rabbit Mab, 1:800 #9664L [D175] Cell Signaling Technology) and rabbit polymer secondary (Biocare Medical # RMR 622L). Quantification of CC3 staining was performed in QuPath v0.2.3 (Queen's University, Belfast, Northern Ireland) using QuPath's build-in 'Positive cell detection' (72) with three regions of interest of the same size manually placed per tumor section.
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