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4 protocols using rabbit anti beta 3 tubulin

1

Immunofluorescence Staining Methodology

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For immunofluorescence staining, cells were washed twice with PBS without Ca2+/Mg2+ (LifeTechnologies) and fixed with 4% PFA in PBS for 10 min at room temperature. PFA was aspirated and cells were washed three times with PBS. Fixed cells were first permeabilized for 10 min in 0.2% Triton X solution and subsequently incubated for 1 h at RT in blocking solution (1% BSA, 5% donkey serum, 0.3 M glycine and 0.02% Triton X in PBS). Following blocking, primary antibodies were diluted in blocking solution and cells were incubated with primary antibody solution overnight at 4 °C except for the γH2A.X antibody which was kept for only 2 h at room temperature on the fixed material. The following primary antibodies were used: chicken anti-SMI32 (1:10,000, Covance), mouse anti-FUS (1:5000, Sigma-Aldrich), rat anti-meFUS (1:1005 (link),), rabbit anti-beta-III-Tubulin (1:3000, Covance), mouse anti-Hb9 (1:100 Development studies Hybridoma Bank), rabbit anti-Islet (1:500, Abcam), mouse anti-yH2A.X (1:500 Millipore), rabbit anti-ChAt (1:500, Chemicon), rabbit anti-53BP1 (1:1000, Novusbio). Nuclei were counter stained using Hoechst (LifeTechnologies).
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2

Immunofluorescence Staining Protocol for Cellular Analysis

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For immunofluorescence staining, cells were washed twice with phosphate-buffered-saline (PBS) without Ca2+/Mg2+ (LifeTechnologies, Carlsbad, CA, USA) and fixed with 4% paraformaldehyde in PBS for 10 min at room temperature. Paraformaldehyde was aspirated and cells were washed three times with PBS. Fixed cells were first permeabilized for 10 min in 0.2% Triton X solution and subsequently incubated for 1 h at room temperature in blocking solution (1% bovine serum albumin, 5% donkey serum, 0.3M glycine (Carl Roth GmBH & Co. KG, Germany) and 0.02% Triton X-100 (Thermo Fisher Scientific, Waltham, MA, USA) in PBS). Following blocking, primary antibodies were diluted in blocking solution and cells were incubated with primary antibody solution for 12 h at 4 °C. The following primary antibodies were used: chicken anti-SMI-32 (1:10.000, Covance, Princeton, NJ, USA), mouse anti-FUS (1:5000, Sigma Aldrich, St. Louis, MO, USA), rabbit anti-beta-III-Tubulin (1:3000, Covance, Princeton, NJ, USA), mouse anti-GM-130 (1:200, BD Pharmingen, Franklin Lakes, NJ, USA), mouse anti-SOD1 (1:100, Cell Applications Inc., San Diego, CA, USA), rabbit anti-TDP-43 (1:400, Abcam, Cambridge, UK), rabbit anti-GFAP (1:1000 Chemicon, Temecula, CA, USA), mouse anti-vimentin (1:100, Sigma Aldrich, St. Louis, MO, USA). The nuclei were counterstained using Hoechst 33342 (LifeTechnologies, Carlsbad, CA, USA).
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3

Histone Modifications in Acute and Chronic ECS

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Hippocampal tissue lysates from the acute (n=6 for sham, n=7 for acute ECS) and chronic (n=4 for sham, n=3 for chronic ECS) ECS experiments were separated by SDS polyacrylamide gel electrophoresis and proteins were transferred to polyvinyldifluoride membranes (GE Healthcare). Following blocking, blots were incubated with rabbit anti-H3 acetylation (H3ac, 1:1000; Abcam), rabbit anti-H3K9 acetylation (H3K9ac, 1:1000; Abcam), rabbit anti-H3K4 trimethylation (H3K4me3, 1:1000; Millipore Bioscience Research Reagents), mouse anti-H3K9 dimethylation (H3K9me2, 1:1000; Abcam), rabbit anti-H3K9 trimethylation (H3K9me3, 1:1000; Abcam), rabbit anti-H3K27 trimethylation (H3K27me3, 1:1000; Abcam), or rabbit anti-H3 (H3, 1:1000; Abcam) antibodies. Blots were also probed with rabbit anti-beta-III-tubulin (1:5000; Covance) antibody as the loading control. Immunoblots were incubated with horseradish peroxidase-conjugated donkey anti-rabbit or sheep anti-mouse secondary antibodies (1:10000, GE Healthcare) and were visualized with an ECL substrate (GE Healthcare). Normalization of blots for histone modifications was done to the total amount of histone H3. Densitometric analysis was performed using Image J 1.48 (NIH).
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4

Immunofluorescence Staining Protocol

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For immunofluorescence staining, cells were washed twice with PBS without Ca2 + /Mg2 + (LifeTechnologies) and fixed with 4% PFA in PBS for 15 min at RT. PFA was aspirated and cells were washed three times with PBS. Fixed cells were first permeabilized for 10 minutes in 0.2 % Triton X solution and subsequently incubated for 1 hour at RT in blocking solution (5% donkey serum in PBS). Following blocking, primary antibodies were diluted in PBS and cells were incubated with primary antibody solution overnight at 4°C. The following primary antibodies were used: chicken anti-SMI32 (1:10000, Covance), rabbit anti-beta-III-Tubulin (1:3000, Covance), rabbit anti-CHAT (1:1500, Chemicon), mouse anti-MAP2 (1:500, BD Biosciences). Post to the primary antibodies cells were washed three times for 5 min with PBS.
Secondary antibodies were diluted in PBS and incubated with the cells for 1.5 hours at RT. Following secondary antibodies were used: donkey anti-chicken IgY FITC (1:500, Merck Millipore), donkey anti-rabbit IgG647 (1:500, Life Technologies), donkey anti-rabbit IgG488
(1:500, Life Technologies) and donkey anti-mouse IgG555 (1:500, Life Technologies). Nuclei were counter stained using Hoechst (LifeTechnologies).
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