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Vnmrs 800 mhz nmr spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The VNMRS 800 MHz NMR spectrometer is a high-performance nuclear magnetic resonance (NMR) instrument designed for advanced analytical applications. It operates at a frequency of 800 MHz, providing high-resolution data for the characterization of chemical structures and molecular interactions. The core function of this spectrometer is to generate and detect radio-frequency signals that interact with the nuclear spins of samples, enabling the acquisition of detailed NMR spectra.

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3 protocols using vnmrs 800 mhz nmr spectrometer

1

NMR Characterization of HdeA Protein

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HdeA samples were prepared for NMR through dialysis into 50 mM citrate buffer at the desired pH, except for experiments recorded at pH 1.5, which utilized a buffer mixture of 50 mM sodium phosphate and 45 mM citrate. The pH meter was calibrated before each use and the buffers were regularly checked with a different pH probe and meter to ensure accuracy. NMR samples for peak and chemical shift analysis had protein concentrations in the range of 0.5 – 1.2 mM, while protein concentrations for relaxation experiments were 1.0 – 1.2 mM.
NMR data were obtained at 25 °C on an in-house Agilent DD2 600 MHz spectrometer with a triple resonance probe. For some experiments we also utilized a Varian VNMRS 800 MHz NMR spectrometer at NMRFAM (UW Madison) equipped with a cryogenic probe, or a Varian VNMRS 800 MHz NMR spectrometer with a room temperature probe at the University of Connecticut Health Sciences Center. All raw data were processed using NMRPipe/NMRDraw [33 , 34 (link)] and the resulting spectra were viewed and analyzed using NMRViewJ [35 , 36 (link)]. Most assignment and dynamics data have been deposited at BMRB, entry 50421. Data for “extra” peaks and CPMG are provided in the supplemental materials.
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2

NMR Analysis of RNA-Inhibitor Complex

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NMR data of RNA and its complex with BRB were collected on an Agilent VNMRS 800 MHz NMR spectrometer equipped with a cryogenic probe. RNA oligonucleotides were dissolved in 10 mM Na2HPO4 buffer (pH 7) with the addition of 100 mM NaCl, 1 mM EDTA and 10% 2H2O. The final RNA concentration of individual strands in 300 μl was 300 μM. 1D 1H and 2D NOESY and TOCSY spectra were acquired at 25°C utilizing excitation sculpting solvent suppression. The processing and assignment of spectra were performed using NMRPipe and CcpNmr software.
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3

NMR Structural Characterization of Trop2 Peptides

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For both peptides, complete sets of homonuclear (NOESY and TOCSY) and heteronuclear (15N-HSQC and 13C-HSQC) spectra were recorded at 298 K. Samples contained Trop2IC or Trop2ICP peptides at 5 mM concentration in 50 mM sodium phosphate, pH 7.40. For structure calculations, 70% (v/v) TFE was included in the sample buffer. All NMR experiments were recorded on an Agilent-Varian VNMRS 800 MHz NMR spectrometer using an 1H/13C/15N triple resonance cold probe head with inverse detection at 298 K. Chemical shifts were referenced to the internal standard 2,2-dimethyl-2-silapentane-5-sulfonate, DSS (Sigma-Aldrich, USA). Obtained data were processed using the NMRPipe suite49 (link) and analyzed using Sparky50 . Individual amino acid proton spin system assignments were performed using two-dimensional TOCSY experiments (mixing time 80 ms). Sequence-specific assignments were obtained by analysis of NOESY (mixing time 40, 80 and 250 ms) sequential cross peaks connecting neighboring NH and Hα protons. 13C and 15N chemical shifts were extracted from 13C- and 15N-HSQC spectra following 1H chemical shift assignment from homonuclear NMR experiments.
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