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164 protocols using jem 1010 electron microscope

1

Electron Microscopy Analysis of Cardiac Tissue

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After fixation of the cardiac specimens in 2.5–4% glutaraldehyde solution (pH 7.4) for 48 h at 4 °C, these specimens were cut into small particles and washed with distilled water. After that, they were fixed in 1% osmium tetraoxide with 15 mg/mL of potassium ferrocyanide for 1–2 h at 4 °C. The tissue specimens thereafter were cut with an ultramicrotome to sections of 0.5–1 μm thickness and stained with uranyl acetate and lead. After that, these sections were examined and photomicrographs captured using a JEOL, JEM 1010 electron microscope (Jeol Ltd., Tokyo, Japan).
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2

Histological and Ultrastructural Analysis of Animal Eyelids

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After the end of the treatment, scarification was done. The eyelid of each animal in each group was dissected 24 hrs after the last treatment dose, washed with saline, and divided into small pieces and immersed in 10% formalin for light microscopy and in 2.5% glutaraldehyde for transmission electron microscopy. The formalin fixed specimens were processed for preparation of serial paraffin sections of 5 µm thickness for H&E staining.14 The glutaraldehyde fixed ones were subjected to many steps to obtain ultra-thin sections that were contrasted with uranyl acetate for 10 min and lead citrate for 5 min, and examined and photographed using a JEOL JEM 1010 electron microscope (JEOL Ltd, Tokyo, Japan) in the Electron Microscope Research Laboratory of the Histology and Cell Biology Department, Faculty of Medicine, Sohag University (Egypt).
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Cardiomyocyte Ultrastructural Analysis

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Cardiomyocytes seeded in p35 plates with Matrigel® and RPMI/B27 containing insulin, 10% FBS and 10 µM Y27632 were fixed with 4% paraformaldehyde and 2% glutaraldehyde in 0.1 M phosphate buffer pH 7.4 for 2 h at room temperature. Fixed cells were included in epoxy resin (TAAB 812 resin, TAAB laboratories, Berkshire, England) by conventional methods. For this, cells were stained for 1 h with 1% osmium tetroxid + 0.08% potassium ferricianide at 4 °C and with 2% uranyl acetate in water for another hour at 4 °C. Dehydration (EtOH: 50%, 75%, 90%, 95% and 100%) was carried out at 4 °C and embedded with the resin (epoxy resin: EtOH 1:2, 1:1, 2:1, and 100% resin) at room temperature. Finally, the resin was polymerized for 48 h at 60 °C. Ultrathin 70 nm cuts were obtained on a Leica Ultracut UCT ultramicrotome (Leica, Vienna, Austria) with a DiATOME diamond blade. Sections were collected on hexagonal drawing Cu/Pd grids, and 100 windows per square inch (200 mesh) were coated with formvar and a layer of evaporated carbon. The sections were stained with 2% uranyl acetate in water for 7 min and with Reynolds lead citrate for 3 min. About 100 images from each sample were taken with a 4 K × 4 K, F416 CMOS camera from TVIPS (Gauting, Germany) at 5000× or 8000× magnification on the JEOL JEM-1010 electron microscope (JEOL, Akishima, Tokyo, Japan) at an electron acceleration voltage of 80 kV.
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Transmission Electron Microscopy of Ovarian Tissue

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Parts of the ovarian tissues were fixed in 2.5%–4% glutaraldehyde in 0.1 M cocodylate buffer (pH 7.4). Then, they were kept in glutaraldehyde solution for 24–48 hr at 4°C. Thereafter, they were cut into small pieces and washed with distilled water, then postfixed in 1% osmium tetraoxide with 15 mg/ml of potassium ferrocyanide for 1–2 hr at 4°C. These specimens were cut using an ultramicrotome (JEOL‐JUM‐7) and stained with uranyl acetate and lead. After that, the specimens were examined and photographed using a JEOL, JEM 1,010 electron microscope (Jeol Ltd, Tokyo, Japan).
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Ultrastructural Analysis of K. pneumoniae

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The effect of LL-37, SP-A, rfhSP-A, and combinations thereof on the ultrastructure of K. pneumoniae was visualized by means of transmission electron microscopy, as described in (25 (link)). K. pneumoniae bacteria in the mid-logarithmic growth phase (2 x 108 CFU/ml) were treated with 55.5 LL-37, of 0.3 µM SP-A, 1.75 µM rfhSP-A SP-A, mixed LL-37/SP-A and mixed LL-37/rfhSP-A at 37°C for 30 min in PBS buffer. Cells were spun down and PBS medium was removed. Cell pellets were then chemically fixed with 4% paraformaldehyde and 2.5% glutaraldehyde for 4 h at 4°C and washed three times with PBS. Next, bacteria were post-fixed with 1% osmium tetroxide for 1 h. Samples were then washed thrice with bi-distilled water and dehydrated using sequential exposure to acetone concentrations ranging from 30% to 100% for 15 min at room temperature. Next, infiltration and embedding were performed using Spurr’s resin. The samples were sectioned using an ultramicrotome with a diamond knife and were mounted on copper grids. Samples were examined on a JEOL JEM 1010 electron microscope (JEOL, Tokyo, Japan).
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Ultrastructural Analysis of Mouse Skin

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Small mouse skin specimens were fixed with 4% cacodylate-buffered glutaraldehyde solution (pH 7.4) for 2 h at room temperature, rinsed in a cacodylate-buffered solution supplemented with sucrose, post-fixed in 1% OsO4 (Electron Microscopy Sciences, Foster City, CA, USA) for 1 h at room temperature, dehydrated with graded alcohol series, immersed in propylene oxide, and embedded in Epon 812 resin (Sigma-Aldrich). Semithin sections (2 μm thick) were obtained with an RMC MT-X ultramicrotome (EMME3, Milan, Italy), stained with a toluidine blue solution in 0.1 M borate buffer, and observed under a light microscope to identify the dermal tissue areas suitable for TEM. Ultrathin sections (~70 nm thick) of the selected skin areas were cut with the same ultramicrotome using a diamond knife and stained sequentially with UranyLess (Electron Microscopy Sciences, Foster City, CA, USA) and alkaline bismuth subnitrate solutions. Ultrathin sections were examined and photographed under a JEOL JEM-1010 electron microscope (Jeol, Tokyo, Japan) equipped with a MegaView III high-resolution digital camera and imaging software (Jeol). TCs and telopodes detected in electron microscopy images were digitally colored in blue using Adobe Photoshop CS6 software (Adobe Systems, San Jose, CA, USA).
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7

Multifaceted Renal Biopsy Analysis

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Part of the renal biopsy tissue was fixed in Formalin Acetic Acid Alcohol (FAA), embedded in paraffin, sectioned in 3 µm‐thick layers and stained with hematoxylin‐eosin, Masson's trichrome, silver, and periodic acid Schiff for examination by light microscopy. Part of the remaining tissue was frozen for immunohistology and another part was fixed in glutaraldehyde for electron microscopy. Immunohistochemistry was performed using antibodies directed against C1q, C3, IgA, IgG, IgM, kappa, and lambda light chains of immunoglobulins using standard protocols. Immunohistochemistry for PODXL was performed according to the manufacturer's protocol using polyclonal rabbit antibodies (Sigma‐Aldrich product reference HPA002110). Semiquantitative analysis of staining was performed using Image‐Pro Plus 7 (Media Cybernetics, Inc. Rockville, MD, USA). Ultrathin sections were prepared for electron microscopy studies and were examined using a JEOL JEM‐1010 electron microscope (JEOL, Tokyo, Japan).
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8

Ultrastructural Analysis of Mouse Muscle

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Gastrocnemius specimens of 3 month old female mice were fixed in 1% glutaraldehyde/4% PFA in 0.1 M cacodilate buffer overnight, postfixed in 1% osmium tetroxide in water for 60 min and dehydrated through a series of ethanol solutions and acetone. After the last dehydration step, samples were incubated in a 1:3, 1:1, 3:1 mixture of durcupan resin and acetone and cured at 60 °C for 48 h. Longitudinal ultrathin sections (50–60 nm) were obtained with a diamond knife (Diatome) in an ultramicrotome (Leica Reichert ultracut S) and collected in 200-mesh copper grids. Sections were counterstained with 2% uranyl acetate in water for 20 min followed by a 10 min incubation step with a lead citrate solution. Samples were examined with a JEOL JEM1010 electron microscope (Jeol Ltd., Tokyo, Japan). For ultrastructural analysis of cultured myotubes, myoblasts were seeded and differentiated in Permanox plastic chamber slides (Lab-Tek) and subsequently fixed and embedded as described above except that acetone was not included in the dehydration steps. Myotubes were embedded in Epon resin, sectioned and counterstained as indicated for muscle tissue.
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9

Characterization of Cellulose Nanofibers via TEM

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TEM images of electrospun fibers were performed using a JEOL JEM-1010 electron microscope (JEOL, Tokyo, Japan) operated at 80 kV. Drops (about 10 μL) of cellulose nanofiber suspension were deposited onto a carbon film-coated copper grid (200 mesh). The grid was allowed to dry at 25 °C for 2 days and then stored in a desiccator until use.
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10

Glutaraldehyde-Osmium Fixation and Electron Microscopy

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Specimens were fixed in 2.5% glutaraldehyde buffered with 0.1 M phosphate buffer at pH 7.4 for 2 hours at 4ºC, post fixed in 1% osmium tetroxide for one hour at 4ºC. The specimens were processed and embedded in resin. Semithin sections were done at 1um thickness and stained by toluidine blue [14] . Ultra-thin sections were performed using ultramicrotome and stained with uranyl acetate and lead citrate and then examined and photographed using a JEOL JEM 1010 electron microscope (JEOL Ltd, Tokyo, Japan) at the Electron Microscope Research Laboratory of the Histology and Cell Biology Department, Faculty of Medicine, Assuit University.
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