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2 protocols using bromodeoxyuridine (brdu)

1

Immunohistochemical Analysis of Neurogenesis

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Mice were perfused with 4% paraformaldehyde in phosphate-buffered saline
(PBS). After perfusion, brain blocks with SVZ were removed and
postfixed in 4% paraformaldehyde at 4°C for 24 hr. The blocks were
then equilibrated in sucrose (30% in PBS) and embedded in optimal
cutting temperature compound and kept frozen at −80°C. Cryosections
were cut at a thickness of 30 μm. Sections were incubated in 1N HCl at
0°C for 5 min and 2N HCl at 37°C for 15 min and washed with PBS before
immunohistochemical staining. Sections were then blocked in 3% normal
donkey serum in PBS with 1% Triton X-100 for 30 min and further
incubated in the following primary antibodies 4°C overnight: BrdU
(mouse, 1:200, Developmental Studies Hybridoma Bank, G3G4), SOX2
(rabbit, 1:200, Cell Signaling Technology, #2748), doublecortin (DCX;
goat,1:200, Santa Cruz Biotechnology, C-18). After three washes with
PBS, the samples were incubated in an appropriate secondary antibodies
coupled to Alexa488 or Alexa 568 (Invitrogen) at a dilution of 1:1,000
at room temperature for 2 hr. After washing with PBS for 3 times, the
sections were mounted with Vectashield mountain medium with DAPI
(Vector Laboratory).
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2

Antibody-Based Autophagy and Apoptosis Analysis

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The following antibodies were used: cleaved caspase-3 (Cell Signaling Technology), cleaved PARP (Cell Signaling Technology), LC3B (Cell Signaling Technology), β-actin (Sigma-Aldrich), FIP200 (ProteinTech Group), Atg13 (Cell Signaling Technology), BrdU (Developmental Studies Hybridoma Bank), goat anti-rabbit FITC (Jackson ImmunoResearch Laboratories). The following reagents were used: bafilomycin A1, spautin-1, paclitaxel, epirubicin, cisplatin, puromycin, BrdU, trichloroacetic acid, sulphorhodamine B, protease inhibitor cocktails, DAPI were from Sigma-Aldrich. MitoTracker Green FX (Invitrogen) and MitoTracker Red CMXRos (Invitrogen), Permount SP15-100 Toluene Solution (Fisher Scientific), DNase I (Roche).
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