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13 protocols using ab134100

1

Investigating GDNF and HGF Signaling Pathways

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Human recombinant HGF (294-HGN-005) and GDNF (212-GD-010) were obtained from R&D Systems (Minneapolis, MN). Growth factor-reduced Matrigel (BD354230) was obtained from CORNING (Corning, NY), and atelocollagen (DME-02) was obtained from Koken (Tokyo, Japan). Antibodies used in this study were as follows: goat polyclonal anti-GDNF antibody (AF-212-NA) (R&D Systems); mouse anti-beta-actin antibody (3598R-100) (BioVision, Milpitas, CA); rabbit monoclonal anti-Ret antibody (E1N8X) (CST #14556) (Cell Signaling Technology, Danvers, MA); rabbit monoclonal anti-Ret antibody (ab134100) (Abcam, Cambridge, MA); anti-Met antibody (ab39075) (Abcam, Cambridge, MA); anti-phospho-Met antibody (CST #3077) (Cell Signaling Technology, Danvers, CO); anti-aquaporin 1 (AQP1) antibody (sc-20810) (Santa Cruz Biotechnology, Dallas, TX).
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2

Western Blot Analysis of NRG1 and RET

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Total protein was extracted from HSCR ganglionic colon tissues with a radio-immunoprecipitation assay (RIPA) buffer containing protease inhibitors (cOmplete, ULTRA, 132Mini, EDTA-free, EASY pack; Roche, Basel, Switzerland). Protein samples were boiled at 95 °C for 5 min, cooled at room temperature for 5 min and then centrifuged. Protein concentrations were determined using the BCA (bicinchoninic acid) method. Equal amounts of protein (50 μg) were separated by 12.5% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to a polyvinylidene fluoride (PVDF) membrane (Roche, Basel, Switzerland). Membranes were blocked using 5% skimmed milk and incubated with the appropriate diluted antibodies (anti-NRG1, 1:1000, #ab27303; anti-RET, 1:1000, #ab134100; Abcam, Cambridge, UK). Membranes were subsequently incubated with a 1:4,000 dilution of a horseradish peroxidase-conjugated secondary antibodies (Invitrogen, Logan, UT, USA) for 1 h, followed by 3 washes with TBST for 15 min. Membranes were then processed using enhanced chemiluminescence (ECL) (Bio-Rad, Hercules, CA, USA) and were exposed to film (Canon, Tokyo, Japan). The experiments were repeated 3 times. The protein expression levels of NRG1 and RET were normalized to those of GAPDH. All the experimental procedures were conducted according to the manufacturer’s recommended instructions.
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3

Immunohistochemical Detection of RET Protein

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Immunohistochemistry analysis (IHC) was performed on thin sections (3 μm) of previously formalin-fixed and paraffin-embedded tissues. The antibody used was monoclonal rabbit anti-human RET (ab134100; Abcam Inc., Cambridge, MA, USA), Sections representing MTC were submitted to routine immunohistochemical technique, which comprises deparaffination and rehydration, antigenic recovery, inactivation of endogenous peroxidase, and blockage of unspecific reactions. Primary antibodies were incubated overnight at a temperature of 4°C, at dilutions of 1:400 followed by application of streptavidin horseradish peroxidase conjugate (LSAB; DakoCytomation, Via Real Carpinteria, CA, USA), and diaminobenzidine tetrahydrochloride (Kit DAB; DakoCytomation). Absence of the primary antibody was used as a negative control.
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4

Immunoblotting of Cancer Signaling Proteins

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Immunoblotting was performed as described previously (48 (link)). The following primary antibodies were used: anti-BRD4 antibody (A301-985A100, Bethyl Laboratories), anti-RET antibody (ab134100, Abcam), anti-RET (phospho Y1015) antibody (ab74154, Abcam), anti-Raf1 antibody (A19638, Abclonal), anti-phospho-Raf1-S259 antibody (AP1012, Abclonal), anti-MEK1/MEK2 antibody (A4868, Abclonal), anti-phospho-MAP2K1-S217/MAP2K2-S221 antibody (AP0209, Abclonal), anti-ERK1/2 antibody (A4782, Abclonal), anti-phospho-ERK1-T202/Y204 + ERK2-T185/Y187 antibody (AP0472, Abclonal), anti-p90Rsk antibody (A4695, Abclonal), anti-phospho-P90RSK-S380 antibody (AP0562, Abclonal), anti-ERα antibody (ab32063, Abcam), anti-phospho-ERα (Ser167) antibody (64508s, Cell Signaling Technology), anti-phospho-ERα (Ser118) antibody (ab32396, Abcam), anti-CCND1 antibody (ab40754, Abcam), anti-c-MYC antibody (SC-40, Santa Cruz Biotech) and anti-ACTIN antibody (8432, Cell Signaling Technology).
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5

Protein Expression Analysis in HSCR Tissues

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Total protein was extracted from HSCR colon tissues (aganglionic, transition, and dilated segments, n = 3) or cells (n = 3) with a radio-immunoprecipitation assay (RIPA) buffer containing Protease and Phosphatase Inhibitor Cocktail (Halt, Thermo Fisher Scientific, United States). Cell lysates were sonicated, protein concentrations were quantified using the BCA method (P0012S, Beyotime, China), and equivalent protein were resolved by 8% SDS-PAGE (G2061-50T, servicebio, China) in reducing conditions and blotted onto a polyvinylidene fluoride (PVDF) membrane (Roche, Basel, Switzerland). Membranes were blocked using 5% Bovine albumin and incubated with the appropriate diluted antibodies (anti-NRG1, 1:1000, ab191139; anti-RET, 1:1000, ab134100; anti-SOX10, 1:1000, ab227680; Abcam, United Kingdom), (anti-ERBB3, 1:1000, 12708, Anti-Akt, 1:1000, 4,691, anti-pAkt, 1:1000, 4,060, Cell signaling technology, United States), (anti-GAPDH, 1:5000, 60004-1-Ig, HRP-conjugated Affinipure Goat Anti-Mouse IgG (H + L), 1:5000, SA00001-1, HRP-conjugated Affinipure Goat Anti-Rabbit IgG (H + L), 1:5000, SA00001-2, proteintech, China). The protein expression levels were normalized to those of GAPDH. Results are representative of at least three independent experiments.
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6

Immunofluorescence Staining Assay

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Cells on iBidi treat 8-chamber slides were fixed for 15 min using 4% paraformaldehyde (PFA), washed one time with PBS and permeabilized 10 min using PBS/0.1% Triton X-100. Cells were blocked using PBST (PBS+ 0.1% Tween 20) with 2% Bovine Serum Albumin (BSA). Cells were incubated with primary antibodies (α-dsRNA (SCICONS 10010500), α-TUBB3 (BioLegend 802001), α-Nucleocapsid (GeneTex GTX135357), α-Trk.A (abcam ab216626), α-Trk.B (Rnd Systems AF1494), α-Trk.C (Rnd Systems MAB373), α-CGRP (abcam ab81887), and α-Ret (abcam ab134100)) diluted (1:400) in PBST with 1% BSA overnight in a humidified chamber at 4°C. After 3 washes of 10 min in PBST, cells were incubated with secondary antibody (AlexaFluor – Life Technologies) diluted (1:1,000) in PBST with 1% BSA for 1 hour at room temperature. Stained cells were washed 3 times with PBST containing DAPI and mounted using iBidi mounting medium. Slides were imaged using RPI spinning disk confocal microscope.
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7

Immunohistochemistry and FISH Analysis of RET

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Formalin-fixed paraffin-embedded (FFPE) sections were incubated in a solution of 0.3% H2O2 for 15 min to inhibit endogenous peroxidase activity. The sections were then incubated for 1 h at room temperature with primary antibody solutions: RET antibody (ab134100; Abcam, Cambridge, UK; 1:200 dilution). The EnVision Systems for rabbit antibodies (K4003; DAKO, Glostrup, Denmark) were applied according to manufacturer instructions. Slides were stained with liquid diaminobenzidine tetrahydrochloride, a high-sensitivity substrate-chromogen system (K3468; DAKO). RET FISH tests were performed on FFPE tumor tissues using ZytoLight SPEC RET Dual Color Break Apart Probes according to manufacturer instructions (ZytoVision, Bremerhaven, Germany). The SPEC RET Dual Color Break Apart Probe is a mixture of two direct-labeled probes hybridizing to the 10q11.21 band. The orange fluorochrome direct-labeled probe hybridizes proximal to the RET gene and the green fluorochrome direct-labeled probe hybridizes distal to the gene. Signals for each locus-specific FISH probe were assessed under an Olympus BX51TRF microscope (Olympus, Tokyo, Japan) equipped with a triple-pass filter (4′,6-diamidino-2-phenylindole/Green/Orange; Vysis, Downers Grove, IL, USA).
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8

Immunohistochemical Analysis of Ret Expression

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Briefly, tissue sections from pheochromocytoma or paraganglioma were processed on a Discovery Ultra Staining Module. Antigen retrieval was performed in Cell Conditioning 2 (citrate solution pH = 6.0) for 80 min and then incubated with Anti-Ret antibody [EPR2871] Abcam ab134100 at 1:400 dilution for 1h. Sections were then incubated with biotinylated anti-rabbit or anti-mouse antibody followed by streptavidin-peroxidase. Reaction was developed by 3,3′-diaminobenzidine (DAB) and counterstained with hematoxylin. Images were acquired under 200× magnification. H score was calculated by combining the signal intensity to the percentage of cells with positive signals as reported.81 (link) Mouse adrenals were processed using a similar approach.
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9

Antibody Immunostaining Protocol

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All antibodies were purchased as follows: anti-NEDL2 (ab92711, Abcam), anti-Ret (ab134100, Abcam), anti-Neurofilament (ab50284, Abcam), anti-Akt (sc-8312, Sata Cruze), anti-pAkt (#4060, Cell Signaling), anti-S6K1 (#9202, Cell Signaling), anti-pS6K1 (#9234, Cell Signaling), anti-p85 (#4257, Cell Signaling), anti-p110 (#4249, Cell Signaling), anti-BrdU (#5259, Cell Signaling), anti-Myc (MBL), anti-Flag (MBL), anti-Hsp90 (sc-101494, Santa Cruz).
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10

Protein Expression Analysis by Western Blotting

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Protein sample preparation and western blotting were performed as previously described (20 (link)). Blots were incubated with primary antibodies against PODXL (1:1,000; cat. no. ab150358; Abcam), RET (1:500; ab134100; Abcam) and WT1 (1:1,000; cat. no. ab89901; Abcam), and NPHS1 (1:500; cat. no. sc-376522; Santa Cruz Biotechnology, Inc.), WNT11 (1:500; cat. no. sc-365033; Santa Cruz Biotechnology, Inc.) and GAPDH (1:3,000; cat. no. sc-47724; Santa Cruz Biotechnology, Inc.) overnight at 4˚C, followed by appropriate peroxidase-conjugated secondary antibodies (1:3,000; anti-mouse IgG, HRP-linked; cat. no. 7076; Cell Signaling Technology, Inc.; anti-rabbit IgG, HRP-linked; cat. no. 7074; Cell Signaling Technology, Inc.). GAPDH served as an internal control. Visualization of the immunocomplexes was conducted using an enhanced chemiluminescent HRP substrate (cat. no. 1829501; EMD Millipore) and followed by exposure to X-ray films.
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