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31 protocols using bisbenzimide h 33342 trihydrochloride

1

Visualizing Cx43 in Glioblastoma Cytoskeleton

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To confirm the presence of Cx43 in U-87 and U-251 actin cytoskeleton specifically, GBM cells were fixed with 4% PFA for 30 minutes followed by permeabilization with 0.3% Triton for 10 minutes. The unspecific binding sites were blocked with goat-serum (Sigma-Aldrich, G9023, 1:50 in PBS, 30 minutes). After washing, cells were incubated with anti-connexin 43 (Merck Millipore, MAB3068, USA, 1:100 in PBS) overnight, followed by incubation with FITC-coupled anti-rabbit IgG (Sigma-Aldrich, F6005, 1:200 in PBS, 1.5 hours) and subsequently treated with rhodamin-phalloidin (Sigma-Aldrich, P1951, 1:20 in PBS, 1 hour). Then bisBenzimide H 33342 trihydrochloride (Hoechst, Sigma-Aldrich, B2261, 1:1,000 in PBS, 20 minutes) was applied to counterstain the cell nuclei.
To visualize cell coupling, microinjected cells were fixed with 4% PFA plus 0.2% picrinic acid for 2 hours. After several washing steps, cells were incubated with ExtrAvidin FITC (Sigma-Aldrich, E2761, 1:100 in PBS, 2 hours) to visualize neurobiotin. To count the cells, bisBenzimide H 33342 trihydrochloride (Hoechst, Sigma-Aldrich, B2261, 1:1,000 in PBS, 20 min) was applied to stain the nucleus. Finally the cover slips were mounted on microscope slides with fluoromount mounting medium.
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2

3D HyStem Hydrogel Cell Culture

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HyStem® hydrogels (ESI Bio, Alameda, CA) were reconstituted and mixed per manufacturer's instructions. Before seeding, cells were washed 3x with 5 mL DMEM/F12. Next, 50,000 cells were added per 20 μL of a 1:4 ratio of Extralink® to HyStem® and then 20 μL was dispensed per well into Aurora 384 well plates (Brooks Automation, Inc., Chelmsford, MA). After 30 min of crosslinking, 50 μL of DMEM/F12 with 50 ng/mL EGF or vehicle (0.1% [w/v] BSA in PBS) was added per well. After 3 and 5 days, media was replaced with 1x PBS containing 4 μM calcein AM (Life Technologies), 4 μM ethidium homodimer-1 (Life Technologies), and 4 μM bisBenzimide H 33342 trihydrochloride (Sigma-Aldrich). Cells then were incubated for 1 hr, and imaged with a Nikon A1-Rsi confocal. Resultant images were analyzed for cell survival, spheroid counts and spheroid diameter as previously described [54 (link)].
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3

Immunofluorescence Staining of Cell Markers

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Cells were fixed in 4% paraformaldehyde (Sigma-Aldrich) for 15 min at room temperature. Two 5-min PBS washes were performed to remove fixation solution. Cells were then permeabilized in blocking buffer (2% BSA in PBS + 0.25% Triton X-100) for 1 hr at room temperature. Blocking buffer was then drained and replaced with blocking buffer supplemented with primary antibodies (mouse anti-NCAM [304605, BioLegend] or goat anti-ZEB1 [sc-10570, Santa Cruz Biotechnology]), diluted 1:200. Following 1 hr at room temperature, cells were washed three times in PBS for 5 min. Secondary antibodies (Cy2 or Cy3 donkey anti-goat [Jackson ImmunoResearch Laboratories]), diluted 1:200 in blocking buffer, were then added and incubated for 1 hr at room temperature. Hoechst staining was performed using bisBenzimide H33342 trihydrochloride (Sigma-Aldrich) diluted 1:10,000 in PBS, for 2 min. Sections were visualized using an Olympus IX81 microscope.
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4

Multidrug Resistance Cell Line Cultivation

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Cell culture reagents were purchased from Celbio s.r.l. (Milano, Italy). CulturePlate 96/wells plates were purchased from PerkinElmer Life Science (Waltham, MA) and Falcon (BD Biosciences, Bedford, MA). Calcein‐AM, bisBenzimide H 33342 trihydrochloride were obtained from Sigma‐Aldrich (Milan, Italy).
Cell cultures. MDCK‐MDR1, MDCK‐MRP1 and MDCK‐BCRP cells are a gift of Prof. P. Borst, NKI‐AVL Institute, Amsterdam, The Netherlands. Caco‐2 cells were a gift of Dr. Aldo Cavallini and Dr. Caterina Messa from the Laboratory of Biochemistry, National Institute for Digestive Diseases, “S. de Bellis”, Bari (Italy). HT29 and HT29/DX cells from ATCC (Manassas, VA).
MDCK and Caco‐2 cells were grown in DMEM high glucose supplemented with 10 % fetal bovine serum, 2 mM glutamine, 100 U/mL penicillin, 100 μg/mL streptomycin, in a humidified incubator at 37 °C with a 5 % CO2 atmosphere.
HT29 cells were grown in RPMI‐1640 supplemented with 10 % fetal bovine serum (FBS), 2 mM glutamine, 100 U/mL penicillin, 100 mg/mL streptomycin; HT29/DX cells were grown in the above mentioned medium containing 50 nM doxorubicin to maintain the chemoresistant phenotype.[32]
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5

Cell Culture Reagents and Fluorescent Dyes

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Cell culture reagents were purchased from Celbio s.r.l. (Milano, Italy). CulturePlate 96/wells plates were purchased from PerkinElmer Life Science; Calcein-AM, bisBenzimide H 33342 trihydrochloride were obtained from Sigma-Aldrich (Milan, Italy).
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6

TGF-β1 Signaling Pathway Analysis

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Recombinant human TGF-β1 was purchased from R&D systems (Shanghai, China). TGF-β1 receptor blocker SB525334 was purchased from Selleck Chemicals (Shanghai, China). The antibodies used included mouse anti-alpha smooth muscle actin antibody (Sigma Aldrich, St. Louis, MO, USA) and goat anti-mouse IgG (whole molecule)-FITC antibody, Thermo (Shanghai, China). BisBenzimide H33342 trihydrochloride (20mg/ml, Sigma Aldrich, St. Louis, MO, USA) was used for nuclear staining. Paraformaldehyde (PFA) was purchased from FuChen Chemical Reagent Factory (Tianjin, China). Bovine Serum Albumin (BSA) was from HWRK Chem Co., LTD (Beijing, China). Other materials included dimethyl sulfoxide (DMSO); DMEM, high glucose, and pyruvate (Invitrogen, State of California, USA); fetal bovine serum (FBS) (ExCell Bio, Shanghai, China); trypsin from bovine pancreas, EDTA, and Triton X-100 (Sigma Aldrich, St. Louis, MO, USA).
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7

Investigating F-Actin Dynamics and Cofilin Localization in HUVECs

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HUVECs (1.5 × 103 cells/well) were seeded in ibidi μ slides (ibidi GmbH, Munich, Germany), treated with MiuA as indicated for 1 h, and subsequently fixed with 4% (v/v) paraformaldehyde. F-actin was stained with rhodamine phalloidin (1:400, R 415, Molecular Probes, Life technologies) and nuclei were labeled with Hoechst stain (bisBenzimide H33342 trihydrochloride, B2261 Sigma-Aldrich). Images were taken using a Zeiss LSM 510 META confocal microscope (Zeiss, Jena, Germany). For the co-localization experiments cells were treated for 30 min with 50 nM MiuA, and subsequently stained as described above with the addition of an anti-cofilin antibody (D3F9, rabbit, Cell Signaling), and a subsequent step of incubation with an Alexa488 labelled secondary antibody (goat anti rabbit, A – 11008, Invitrogen). These images were obtained on an inverted SP8 confocal microscope (Leica, Germany).
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8

IL-22 Receptor Localization in Hepatocytes

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Immunocytochemistry of the IL‐22 receptor chain IL‐22Rα1 was performed using a primary antibody from Santa Cruz Biotechnology (sc‐134366; Dallas, TX) and an Alexa Fluor 488 goat antimouse immunoglobulin G (A11001; Life Technologies, Carlsbad, CA) as secondary antibody and bisbenzimide H 33342 trihydrochloride (Sigma Aldrich, St. Louis, MO) as nuclear counterstaining on an Olympus FluoView FV1000 microscope (Tokyo, Japan). To this end, human hepatoma cell lines were fixed onto coverslips with 4% paraformaldehyde, permeabilized with 0.25% Triton‐X in phosphate‐buffered saline (PBS), and blocked with 5% goat serum (Sigma Aldrich) in PBS.
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9

Visualizing GFP-tagged REST Protein in HEK-293 Cells

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HEK-293 human embryonic kidney cells [51 (link)] were cultured in Dulbecco’s Modified Eagle Medium (DMEM) (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% (v/v) fetal bovine serum (Thermo Fisher Scientific, Waltham, MA, USA) and 1% (v/v) penicillin/streptomycin (Sigma-Aldrich, St. Louis, MO, USA). Cells were cultured in a humidified incubator at 37 °C with 5% CO2. Mycoplasma contamination was screened using bisBenzimide H 33342 trihydrochloride (14533, Sigma-Aldrich, St. Louis, MO, USA) DNA staining. The HEK-293 cells were plated in 35 mm dishes (density 4 × 104 cells per mL) 16 h before transfection. Cells were transiently transfected using X-tremeGENE™ HP DNA Transfection Reagent according to the manufacturer’s instructions (Roche, Basel, Switzerland), with 250 ng of plasmid (Empty, GFP-only, GFP-tagged WT REST or GFP-tagged MT REST). Live viewing was performed 24 h after transfection, using a Zeiss LSM8800 with Airyscan confocal microscope (Zeiss, Oberkochen, Germany). Cells were spiked with 1 in 100,000 Hoechst for co-visualization of nuclear material. The detector of the confocal was the photomultiplier tube (PMT) and allowed detection of the green fluorescence signal through the Argon laser at 488 nm. Images were visualized and processed using the ZEN Blue Software (latest version) provided by Zeiss (Zeiss, Oberkochen, Germany).
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10

Assessing Sperm Production via Antheridiophores

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Stage 4 antheridiophores were used to assess sperm production36 (link). First, 50 μL water was dropped onto the surface of each antheridiophore and left for 10 min. After pipetting five times, 30 μL water was placed in a 1.5-mL tube with 1.5 μL bisBenzimide H33342 trihydrochloride (1 mg/mL) (Sigma-Aldrich). After staining for 10 min, 10 μL solution was drawn to a C-Chip (NanoEnTek) to check fluorescence by confocal microscopy (OLYMPUS U-HGLGPS BX53).
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