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14 protocols using mgso4 7h2o

1

Observing AF-Derived Fluorescence in Fungi

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For observing AF-derived fluorescence, we prepared PDA supplemented with 3 g·L−1 α-CD (FUJIFILM Wako Pure Chemical, Osaka, Japan) and 0.3 g·L−1 activated carbon (Table 1). We also prepared PD broth (Merck) with activated carbon and without α-CD as the liquid culture medium. Aliquots (495 μL) of the liquid medium were dispensed into 1-mL pipette tips that were sealed with laboratory film (PM-996, Bemis, Neenah, WI, USA) and used for incubation [27 (link)]. The total volume was adjusted to 500 μL by adding the spore solution. To prepare trace element solutions, (CH3CHOCOO)2Ca·5H2O, MgSO4·7H2O, FeCl3·6H2O, and [CH3CH(OH)COO]3Al (FUJIFILM Wako Pure Chemical) were dissolved in distilled water. The trace element solutions were added to the liquid culture media. The final concentrations of Ca, Mg, and Fe were set to 5 mg·L−1 and that of Al was set to 3 mg·L−1. The fungal spore solution (5 μL) was dispensed onto a culture plate or into the liquid culture medium. After liquid cultivation, the laboratory film was removed from each pipette tip, and the tips were centrifuged at 3000× g for 15 min. The AF concentrations were measured in the obtained culture solutions. Mycelia with spores in the incubation tip were dried in a dehydrator (SLI-450N, TOKYO RIKAKIKAI, Tokyo, Japan) at 65 °C overnight, and the fungal mass was calculated using the tip masses before and after incubation.
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2

Cultivation and Characterization of Pseudomonas aeruginosa

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Pseudomonas aeruginosa strains used in this study are listed in Table 1. Bacteria were grown in an Air-Jacketed Incubator IC802 (Yamato Scientific Co., Ltd., Tokyo, Japan) at 37 °C under aerobic conditions, as previously described [12 (link)]. Unless otherwise indicated, bacteria were cultured using lysogeny broth, Lennox (LB)-agar prepared fresh from 1.0% BactoTM Tryptone (Becton, Dickinson and Company, Franklin Lakes, NJ, USA), 0.5% BactoTM yeast extract (Becton, Dickinson and Company, Franklin Lakes, NJ, USA), and 0.5% NaCl (FUJIFILM Wako Pure Chemical Corp., Osaka, Japan). Pseudomonas agar F was prepared from 2.0% BactoTM proteose peptone no. 3 (Becton, Dickinson and Company, Franklin Lakes, NJ, USA), 1.0% BactoTM Casitone (Becton, Dickinson and Company, Franklin Lakes, NJ, USA), 1.0% glycerol (Nacalai Tesque Inc., Kyoto, Japan), 0.15% K2HPO4 (FUJIFILM Wako Pure Chemical Corp., Osaka, Japan), 0.073% MgSO4⋅7H2O (FUJIFILM Wako Pure Chemical Corp.), and 1.5% agar (FUJIFILM Wako Pure Chemical Corp.), and used as a solid medium in STAR SDish9015 ver.2 petri dishes (Rikaken Co., Ltd., Nagoya, Japan) for assays of pyoverdine production. Bacterial growth was quantified by measuring the optical density at 600 nm (OD600) using a WPA CO8000 Cell Density Meter (Biochrom Ltd., Cambridge, UK).
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3

Optimizing Growth Conditions for Haloarchaea

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The H. beimenensis NTU-111 strain used in this study was originally isolated from brine samples from the Beimen saltern in southern Taiwan22 (link). H. beimenensis was grown in basal medium containing 5 g/L yeast extract (Bacto, BD), 5 g/L Casamino acids (Bacto, BD) and 5 g/L MgSO4·7H2O (Wako), pH 7.5. To determine the optimal growth conditions for H. beimenensis, the bacteria were grown in basal medium with various concentrations of NaCl, including 0%, 5%, 10%, 15%, 20%, and 25% NaCl (w/v), and were incubated at 37 °C with shaking at 220 rpm. The concentration of H. beimenensis (OD600) was monitored by a spectrophotometer (Libra S4, Biochrom) every 6 h until 72 h with three replicates.
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4

Murine Sperm Culture Optimization

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All the nutrient media used for mouse sperm were prepared the day before the experiments and the balance of gases in the droplet of sperm was controlled overnight under suitable conditions (5% CO2 and 37 °C). As a culture medium, human tubal fluid (HTF) was prepared, which included NaCl (102 mM; Wako), KCl (4.7 mM; Wako., Japan), MgSO4·7H2O (0.2 mM; Wako), KH2PO4 (0.4 mM; Wako), CaCl2·2H2O (2.0 mM; Wako), NaHCO3 (25 mM; Wako), glucose (2.8 mM; Wako), Na lactate (23.2 mM; Wako), Na pyruvate (0.3 mM; Wako), 0.3% BSA (Sigma., Kanagawa, Japan), penicillin G (100 U/ml; Meiji., Tokyo, Japan) and streptomycin (100 µg/ml; Meiji). Male ICR mice (9−10 weeks old; Charles River Japan Inc., Yokohama-shi, Japan) were sacrificed by cervical dislocation. Spermatozoa collected from the cauda epididymides of ICR male mice were incubated for 1.5 h at 5% CO2 and 37 °C. In this case, 1 × 105 or 1 × 106 cells/mL of spermatozoa were seeded in an HTF droplet of 200 μL before being cultured again in fresh HTF or Ca2+-free HTF (CaCl2·2H2O was removed from the prepared HTF) at 5% CO2 and 37 °C. In general, the number of spermatozoa that can be collected from a male mouse is known to be about 1 × 106 /mL or 5 × 106 /mL at most. We obtained Institutional Review Board approval for this study. This study was overseen by an Animal Care and Use Committee at The University of Tokyo.
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5

Diverse Chemical Standards Characterization

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As test chemicals, anthraquinone (AQ), 2-ethylanthraquinone (2-EA), dibenzofuran (DF), and bis(2-ethylhexyl)phthalate (Bis) were purchased from Tokyo Chemical Industry (Tokyo, Japan). i-Erythritol, 2,2-dimethyl-1,3-propanediol, and putrescine as test chemicals, and acetonitrile and distilled water (HPLC grade, respectively), tetrahydrofuran (stabilizer free, special grade), formic acid, K2HPO4, KH2PO4, Na2HPO4 · 12H2O, NH4Cl, MgSO4·7H2O, CaCl2, FeCl3 · 6H2O, 0.5% phosphate solution, α-D-Glucose, and 1 M sodium hydroxide were purchased from FUJIFILM Wako Pure Chemical (Osaka, Japan). Aniline as a test chemical and acetone were purchased from Kanto Chemical (Tokyo, Japan). Peptone was purchased from Showa Chemical (Tokyo, Japan). Silica gel (5 to 25 µm particle size for thin-layer chromatography) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium sulfite was purchased from Nacalai Tesque (Kyoto, Japan).
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6

Halotolerance of Vibrio chiguensis

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V. chiguensis was incubated in growth medium [5 g/L yeast extract (Bacto, BD), 5 g/L casamino acids (Bacto, BD) and 5 g/L MgSO4·7H2O (Wako), pH 7.5] at 37°C with shaking at 220 rpm. For the halotolerant evaluation, the bacteria were incubated with various NaCl concentrations (0%, 5%, 10%, 15%, 20%, 25%) in the growth medium. To monitor the V. chiguensis concentration, a spectrophotometer (Libra S4, Biochrom) was used to measure three replicates per condition at OD600 every 6 h until 48 h.
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7

Twitching Motility Observation on Minimal Medium

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Colonies on minimal medium (MM) [0.175% (w/v) K2HPO4 (Wako Pure Chemical Industries, Ltd.), 0.075% (w/v) KH2PO4 (Wako Pure Chemical Industries, Ltd.), 0.015% (w/v) sodium citrate (Wako Pure Chemical Industries, Ltd.), 0.025% (w/v) MgSO4.7H2O (Wako Pure Chemical Industries, Ltd.), 0.125% (w/v) (NH4)2SO4 (Wako Pure Chemical Industries, Ltd.), 0.5% (w/v) glucose, and 1.5% (w/v) agar (KATAYAMA Chemical Industries, Co. Ltd., Osaka, Japan)] (Addy et al., 2012 (link)) plates were examined for twitching motility by placing a Petri dish without its lid on the stage of an inverted microscope (an Olympus CKX41, Tokyo, Japan) equipped with 4× and 10× objectives.
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8

Cultivation of Erythritol-Utilizing Bacteria

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SP was obtained from the Japan Collection of Microorganisms (JCM). For cultivation, 802 medium (1% hipolypepton [Fujifilm Wako, Osaka, Japan], 0.2% yeast extract [Fujifilm Wako], 0.1% MgSO4・7H2O [Fujifilm Wako], pH 7.0) with or without erythritol (B Food Science Co., Ltd., Tokyo, Japan) and/or glucose (Fujifilm Wako) were used. Xylitol, sorbitol, and maltitol were provided by B Food Science Co., Ltd.
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9

Biodegradability of Organic Chemicals

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Anthraquinone (AQ), 2-hydroxy-4-methoxybenzophenone (OxB), bis(2-ethylhexyl)phthalate (Bis), 2-ethylanthraquinone (2-EA), 2-hydroxy-4-n-octyloxybenzophenone (OB), and tris(2-ethylhexyl)trimellitate (Tris), shown in Table 1, were purchased as test chemicals for ready biodegradability from Tokyo Chemical Industry (TCI, Japan). Distilled water (HPLC grade), formic acid, acetonitrile (HPLC grade), tetrahydrofuran (stabilizer free, special grade), K2HPO4, KH2PO4, Na2HPO4·12H2O, NH4Cl, MgSO4·7H2O, CaCl2, FeCl3·6H2O, 0.5% phosphate solution, and aniline were purchased from FUJIFILM Wako Pure Chemical (Japan); 1 M sodium hydroxide solution was purchased from Kanto Chemical (Japan); and chloroform was purchased from Nacalai Tesque (Japan). Silica gel (5 to 25 µm particle size for thin-layer chromatography) was purchased from Sigma-Aldrich (USA), and Tween 80 was purchased from TCI. Water solubility for some of the test chemicals was estimated using EPI Suite™ ver. 4.11, a Windows-based suite of physical/chemical property and environmental fate estimation programs developed by the US EPA and Syracuse Research Corp.14 )
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10

Antibacterial Evaluation via MTT Assay

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The antibacterial activities were evaluated using an MTT assay according to the previously published protocol, against Gram-positive bacteria (S. aureus NBRC 100910 and B. subtilis NBRC 13719), with slight modifications [25 (link)]. Bacterial strains were inoculated on YP agar plates [1% polypeptone (Nihon Pharmaceutical, Tokyo, Japan), 0.2% yeast extract (Difco Laboratories, Franklin Lakes, NJ, USA), 0.1% MgSO4⋅7H2O, and 1.5% agar (Fujifilm Wako Pure Chemical Corporation)] and incubated at 37 °C for 12 h. Solutions of compounds were prepared at 10 mM in DMSO and diluted to sixteen sample concentrations (0.078125, 0.15625, 0.3125, 0.625, 1.25, 1.5625 2.5, 3.125, 5, 6.25, 10, 12.5, 25, 50, 100, and 200 μM) in 96-well plates containing the microbial strains incubated in YP medium. A DMSO control was also included. The plates were incubated further at 37 °C for 12 h. Ampicillin (Nacalai Tesque, Kyoto, Japan) and kanamycin (Nacalai) were used as reference reagents. Finally, 10 µL of MTT solution (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (0.5 mg/mL in iPrOH- HCl) was added to each well and incubated further at 37 °C for 1 h. All MIC values were determined in triplicate. The MIC was defined as the lowest concentration at which no growth was observed.
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