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Trypsin

Manufactured by Atlanta Biologicals
Sourced in United States

Trypsin is a proteolytic enzyme that is commonly used in cell and tissue culture applications. It is derived from the pancreas of animals and is used to dissociate adherent cells from the surface of cell culture vessels, enabling the subculture of cells. Trypsin acts by cleaving the peptide bonds in the extracellular matrix proteins that anchor cells to the substrate.

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9 protocols using trypsin

1

Neuronal Culture Reagents and Protocols

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Trypsin, penicillin, streptomycin, heat-inactivated fetal bovine serum, horse serum, and soybean Trypsin inhibitor were obtained from Atlanta Biologicals (Norcross, GA, USA). Minimum essential medium (MEM), deoxyribonuclease (DNase), poly-L-lysine, poly-D-lysine hydrobromide, cytosine arabinoside, NMDA, protease inhibitor cocktail, MK-801, and ifenprodil were purchased from Sigma (St. Louis, MO, USA). Pluronic acid and Fluo-3 AM were purchased from Molecular Probes (Eugene, OR, USA). TCN-201, IPA-3, and NSC23766 were purchased from Tocris (Bristol, UK). Pierce ECL kits (Thermo Fisher Scientific, Rockford, IL, USA), Neurobasal, and B-27 supplements were purchased from Invitrogen Corporation (Carlsbad, CA, USA); the p-PAK1 antibody (Thr 212) from Santa Cruz Biotechnology (Dallas, TX, USA); and the PAK1 antibody anti-rabbit IgG HRP-linked antibody from Cell Signaling Technology (Danvers, MA, USA). Brevetoxin-2 (PbTx-2) was isolated and purified from Karinia breve cultures at the Center for Marine Sciences at the University of North Carolina (Wilmington, NC, USA). QNZ-46 was a gift from SF Traynelis, Department of Pharmacology, Emory University, Atlanta, GA. The GluN2D subtype of NMDA receptor knockout mice was obtained from Daniel T. Monaghan, Department of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, Omaha, Nebraska.
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2

Solid-Phase Synthesis of Lipid Nanoparticles

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Fmoc-protected amino acids, resins, and coupling reagents for solid-phase synthesis were purchased from EMD Millipore. Tris(3-hydroxypropyltriazolylmethyl)amine (THPTA) was purchased from Sigma-Aldrich. 1,2-Dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), 1,2-distearoyl-sn-glycero-3-phosphoethanolamine (DSPE), 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-mPEG1000 (mPEG1000-DSPE), 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-PEG2000-azide (N3-PEG2000-DSPE), and cholesterol (Chol) were purchased from Avanti Polar Lipids. Cyanine 5.5-NHS ester was purchased from Lumiprobe. Cellulose acetate (CA) syringe filters were purchased from Macherey-Nagel Inc. Sephadex® G-50 and LH-20 were purchased from GE Healthcare. LIVE/DEAD® fixable green dead cell stain was purchased from ThermoFisher. AlexaFluor® 680-Wheat Germ Agglutinin conjugate (WGA) and LysoTracker® Blue DND-22 were purchased from Life Technologies. Cell culture reagents such as DMEM, FBS, trypsin, and PBS were purchased from Atlanta Biologicals. Ultrapure water (18 MΩ) was used for preparation of all buffers and in all experiments. All solvents were of analytical grade, purchased from commercial sources and used without further purification, except DMF which was dried over CaH2 under N2, filtered, and distilled under reduced pressure.
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3

Neuroblastoma Cells and Astrocytes Protocol

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Mouse brain neuroblastoma cells (N2-A) and rat primary astrocytes (DI-TNC1) were purchased from American Type Culture Collection (ATCC, Manassas, VA). N2- A cell line used in the current investigation is a neuronal cell line known for its high lactate production compare to other cell lines. We, as well as others, have used this cell line and is considered an appropriate model to evaluate potential anti-cancer agents [22 (link), 23 (link)]. We also used the N2-A cell line to investigate the “Warburg Effect” phenomenon [24 (link)], and cancer cells metabolism [25 (link), 26 (link)]. On the other hand, the DI-TNC1 is an astrocyte immortal cell line with lower lactate efflux production compared to N2-A cells, an observation in our lab. The DI-TNC1 is very important in controlling brain energy metabolism [27 (link), 28 (link)]. Cell culture Dulbecco's Modified Eagle Medium (DMEM), fetal bovine serum (FBS), penicillin/streptomycin, DPBS, and trypsin were all from Atlanta Biologicals (Atlanta, GA, USA). Cells were cultured in 75-cm TC flask at 37°C in humidified 5% CO2 incubator and were subcultured as needed with trypsin/EDTA. Growing media was supplemented with 10% FBS (v/v), 4 mM L-glutamine, and 1% penicillin /streptomycin.
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4

Neuronal Cell Culture Reagents and Techniques

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Trypsin, penicillin, streptomycin, heat-inactivated fetal bovine serum, horse serum and soybean Trypsin inhibitor were obtained from Atlanta Biologicals (Norcross, GA, USA). Minimum essential medium, deoxyribonuclease (DNase), poly-l-lysine, cytosine arabinoside, Hoechest-33342, (+)-5-methyl-10,11-dihydro-5H-dibenzo[a,d]cyclohepten-5,10-imine maleate (MK-801), 2,3-dihydroxy-6-nitro-7-sulfamoyl-benzo[f]quinoxaline-2,3-dione (NBQX), 2-[2-[4-(4-Nitrobenzyloxy)phenyl]ethyl]isothiourea mesylate (KBR-7943), nifedipine, fluorescein diacetate, propidium iodide, dichloromethane and polyvinylpyrrolidone were from Sigma (St. Louis, MO, USA). Tetrodotoxin (TTX) was purchased from Tocris Cookson, Inc. (Ellisville, MO, USA). Anti-stress-activated protein kinase/c-Jun N-terminal kinase (SAPK/JNK) antibody and anti-phospho-SAPK/JNK (Thr183/Tyr185) were from Cell Signaling Technology (Danvers, MA, USA). Anthra[1-9-cd]pyrazol-6(2H)-one (SP 600125), 4-(4-Fluorophenyl)-2-[4-(methylsulfinyl) phenyl]-5-(4-pyridyl) 1H-imidazole (SB 203580), 1,4-diamino-2,3-dicyano-1,4-bis (2-aminophenylthio) butadiene (U0126) and N-benzyloxycarbonyl-Val-Ala-Asp fluoromethyl ketone (Z-VAD-FMK) were from Biomol International (Plymouth Meeting, PA, USA).
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5

Quantifying Cellular Uptake and Localization

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GFP-22 siRNA was purchased from Qiagen (USA) and scrambled siRNA (custom 22 mer) was purchased from GE Healthcare Dharmacon (USA) (Sense Strand: 5’- GCA AGC TGA CCC TGA AGT TC (dTdT)-3’, anti-sense strand 3’- GAA CUU CAG GGU CAG CUU GC-5’, Mol. Wt. 13,965.6 (g/mol), the oligonucleotide has been converted to the 2’-hydroxyl, and annealed), Inc. MTS reagent was purchased from Promega (USA). Lipofectamine® 2000 (L2K) transfection reagent, SYTOX® Red dead cell stain, LysoTracker® Blue DND-22, and AlexaFluor®680 Wheat Germ Agglutinin- (AlexaFluor® 680 WGA) conjugate were purchased from Life Technologies (USA). Label IT® siRNA Tracker intracellular localization kit (Cy3) was obtained from Mirus (USA). Fetal Bovine Serum (FBS), DMEM and RPMI media, sodium pyruvate, PBS and trypsin, were purchased from Atlanta Biologicals (USA). Mark-tubes made of borosilicate glass #50, (L= 80 OD= 1.50 Wall= 0.01 mm) were purchased from Hilgenberg GmbH (Germany).
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6

Neuronal Cell Culture Reagents

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Cell culture reagents were purchased from Life Technologies [Trypsin-EDTA (0.05%), TrypLE, N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid (HEPES), Anti-Anti, B-27 supplement along with Neurobasal, Dulbecco’s modified Eagle’s media (DMEM) and Minimum Essential Media (MEM) medias], Sigma-Aldrich [Cytosine β-D-arabinofuranoside (Ara-C), poly-D-lysine (70–150 kDa), Hank’s Balanced Salt Solution (HBSS), 1,4-Piperazinediethanesulfonic acid (PIPES), 3-(N-morpholino)propanesulfonic acid (MOPS), Ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetraacetic acid (EGTA), insulin, N-Acetyl Cysteine (NAC), hydrocortisone, sodium pyruvate and GlutaMAX], Worthington (Trypsin, Papain, Papain Dissociation Kit, and DNase), Atlanta Biologicals [Horse Serum (HS) and Fetal Bovine Serum (FBS)]. Zinc indicators (FluoZin-3 AM and Newport Green DCF) were obtained from Life Technologies. Vitamin MEM solution, amino acid MEM solution, ZnCl2 (0.1 M stock solution), N,N,N′,N′-Tetrakis (2-pyridylmethyl)ethylenediamine (TPEN), 2-Mercaptopyridine N-oxide sodium salt (pyrithione) were all purchased from Sigma-Aldrich. For GluA2 surface labeling, Alexa 488-CAM2 and Alexa 647-CAM2 were designed and synthesized by the Hamachi research group (Kyoto University; Wakayama et al., 2017 (link)).
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7

MDCK Cell Culture Protocol

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MDCK cell strain-2 obtained from ATCC (Rockville, MD, USA) was grown in 75 cm2 Corning polystyrene flasks (Corning, NY, USA). Dulbecco’s modification of Eagle’s medium (Cellgro, Manassas, VA, USA), which was enriched with 10% fetal bovine serum (Atlanta Biologicals, Lawrenceville, VA, USA), 100 units/mL penicillin, 100 μg/mL streptomycin (Atlanta Biologicals), and 1.42 g/L HEPES sodium was used to culture the cells. The cells were incubated at 37°C, 95% humidity, and 5% CO2. The medium was changed three times a week, and the cells were trypsinized with 0.25% trypsin in 1.0 mM EDTA (Atlanta Biologicals). One-tenth of the harvest cells were seeded in a new polystyrene flask. The MDCK cells used were between passage number 45 and 65.
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8

Articular Chondrocyte Isolation Protocol

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Articular chondrocytes were isolated according to a published procedure
[36 (link)]. Briefly, untreated C57BL/6J
mice were sacrificed and articular cartilages from both knee joints were
collected, rinsed in PBS, and incubated with 2.5% trypsin (Atlanta Biologicals,
Flowery Branch, GA) in 3 mL of PBS at 37°C for an hour. The trypsin was
removed and the tissue was digested with Pronase (2 mg/mL) in Minimal Essential
Medium α Medium (α-MEM) containing penicillin and streptomycin at
37 °C for 1 hr. The Pronase was removed and the exposed articular
cartilage layer was then digested overnight with 0.25 mg/mL of collagenase IV in
α-MEM containing 5% FBS and antibiotics. The digestion was terminated by
the addition of α-MEM containing 10% FBS. The released articular
chondrocytes were filtered through a 70-μ sterile filter, collected by
centrifugation, and expanded in α-MEM supplemented with 10% FBS. The
isolated cells expressed predominantly type II collagen (a marker for
proliferative chondrocytes) with 400- to 500-fold lower levels of type X
collagen (a marker for hypertrophic chondrocytes) or type I collagen (a marker
for fibroblasts and osteoblasts) (Fig. 1C),
confirming that these are bona fide chondrocytes. These cells also expressed
substantial amounts of Sox9 and Rho-associated protein kinase (ROCK), two of the
genes that are essential for cartilage matrix production [37 (link)].
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9

Neuroblastoma Cells and Astrocytes Protocol

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Mouse brain neuroblastoma cells (N2-A) and rat primary astrocytes (DI-TNC1) were purchased from American Type Culture Collection (ATCC, Manassas, VA). N2- A cell line used in the current investigation is a neuronal cell line known for its high lactate production compare to other cell lines. We, as well as others, have used this cell line and is considered an appropriate model to evaluate potential anti-cancer agents [22 (link), 23 (link)]. We also used the N2-A cell line to investigate the “Warburg Effect” phenomenon [24 (link)], and cancer cells metabolism [25 (link), 26 (link)]. On the other hand, the DI-TNC1 is an astrocyte immortal cell line with lower lactate efflux production compared to N2-A cells, an observation in our lab. The DI-TNC1 is very important in controlling brain energy metabolism [27 (link), 28 (link)]. Cell culture Dulbecco's Modified Eagle Medium (DMEM), fetal bovine serum (FBS), penicillin/streptomycin, DPBS, and trypsin were all from Atlanta Biologicals (Atlanta, GA, USA). Cells were cultured in 75-cm TC flask at 37°C in humidified 5% CO2 incubator and were subcultured as needed with trypsin/EDTA. Growing media was supplemented with 10% FBS (v/v), 4 mM L-glutamine, and 1% penicillin /streptomycin.
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