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4 protocols using ab53841

1

Western Blot Analysis of Protein Expression

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For Western blot analysis, cells were lysed in lysis buffer (20 mM Tris–HCl, 150 mM NaCl, 1 mM EDTA, 1% TritonX-100, and protease inhibitors, pH 7.5) at 4°C for 30 min. Equal amounts of cell lysate (25 μg) were separated on 4–12% or 10% acrylamide gels (Thermo Fisher Scientific) and transferred onto 0.22 μm PVDF membranes (Millipore). After blocking with blocking buffer (TBST supplemented with 5% nonfat dry milk), membranes were probed with specific antibodies: mouse anti-CNP (ab6319, 1:2,000; Abcam), goat anti-HIV1 p24 (ab53841, 1:2,000; Abcam), rabbit anti-Tom20 (ab186735, 1:1,000; Abcam), rabbit anti-GAPDH (5174S, 1:1,000; Cell Signaling Technology), rabbit anti-Flag (14793S, 1:1,000; Cell Signaling Technology), and rabbit anti-β-tubulin (ab6046, 1:1,000; Abcam). Subsequently, blots were probed with species-specific IRdye secondary antibodies, and visualization was performed using an Odyssey infrared imaging system (Li-COR).
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2

Western Blot Analysis of PGRN and p24

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Western blot analysis was performed as previously described [35] (link), [52] (link) with minor modifications. Briefly, cultured cells in 60 mm dishes were scraped into lysis buffer (PBS plus protease inhibitors from Sigma). Thirty micrograms of protein was separated by 10% SDS-PAGE and then transferred to polyvinylidene difluoride membrane (Bio-Rad). The blots were blocked in PBS-0.1% Tween-20 containing 5% nonfat milk and then incubated with antibodies at 4°C for 16 h. Primary antibodies were rabbit anti-human PGRN (Invitrogen 40–3400 at 1∶100) or goat anti-human PGRN (R&D Systems AF2420 at 1∶1000) and goat anti-HIV p24 (Abcam, ab53841 at 1∶1000). β-actin (Sigma-Aldrich, A2228) was used as the loading control. The secondary antibodies were HRP-conjugated anti rabbit or anti-goat IgG (Pierce/Thermo Scientific, at 1∶1,000) applied for 1 h at RT. Signals were developed using West Pico or Femto chemiluminescent reagents (Pierce/Thermo Scientific). Densitometry was performed using the NIH ImageJ software.
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3

Visualizing HIV-1 Gag Localization in TZM-bl Cells

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TZM‐bl cells exposed to HIV‐1 Gag‐mCherry viruses pseudotyped with JR‐FL Env (MOI 1) were fixed 3 dpi using 4% paraformaldehyde (PFA). Fixed cells were blocked/permeabilized using 10% fetal bovine serum (FBS), 0.5% saponin in PBS buffer (Immunofluorescence, IF, buffer). Primary antibodies recognizing HIV‐1 p24 (ab53841, Abcam) were diluted in IF buffer to 4 µg/ml and applied to cells for 1h in a humid chamber at 37°C. Anti‐goat secondary antibodies conjugated to Alexa 488 dye (A‐11055, Invitrogen) were diluted to 2 µg/ml in IF buffer and added to cells for 30 min at 37°C. Lipid droplet staining was performed adding Nile Red dye (Cat 60029, Biotium) diluted in PBS to 1 µg/ml, and the preparation was incubated for 10 min at room temperature. Excess of Nile Red dye was removed by washing twice with PBS before microscopy imaging.
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4

Western Blot Analysis of Viral Proteins

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Samples were analysed by electrophoresis on 4–12% (w/v) NuPAGE Bis–Tris gels (Novex, Life Ttechnoloiges, USA) and proteins were blotted on a nitrocellulose membrane. Membranes were blocked overnight in blocking buffer (5% (w/v) milk in PBS with 0.1% (v/v) Tween 20). Primary antibodies were added for 2 h at room temperature in blocking buffer as follows: mouse anti-HBcAg (10E11, Abcam ab8639) 1:4000. Mouse anti-GFP (horseradish peroxidase (HRP)-conjugated, Abcam ab190584) 1:7000. Mouse anti-P24 (HRP conjugated, Abcam ab53841) 1:2000. For tHBcAg Western goat anti-mouse (ThermoFisher scientific, 62–6520) was used in a 1:10.000 dilution in blocking buffer. For development, chemiluminescent substrate (Immobilon, Millipore, USA) was used and chemiluminescence was detected using an ImageQuant LAS 500 (GE Healthcare UK Ltd., United Kingdom).
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