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6 protocols using anti mitofusin 2

1

Immunoblotting for Mitochondrial Proteins

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Mouse monoclonal anti-mitofusin 2 (Cat # ab56889 - 1:1000, RRID:AB_2142629), anti-COX-IV (Cat #ab16056 - 1:1000, RRID:AB_443304) and anti-GAPDH (Cat #ab8245 - 1:1000, RRID:AB_2107448) were from AbCAM (Cambridge, MA, USA). Rabbit polyclonal anti-Stathmin-2/Superior Cervical Ganglion 10 (SCGN10; Cat # NBP1-4946, RRID:AB_10011569) was from Novus Biologicals (Littleton, CO, USA).Rabbit polyclonal FSP-1 was from Sigma Millipore (Cat # 07–2274, RRID:AB_10807552). Anti-mouse monoclonal -MNX1was from DSHB (1:10, Cat# 81.5C10, RRID:AB_2145209). Mouse monoclonal anti-β -tubulin III (Cat # 801201- 1:500, RRID:AB_2313773) was from Biolegend (San Diego, CA, USA). Peroxidase-conjugated anti-mouse IgG (Cat #7076S - 1:1000, RRID:AB_330924) was from Cell Signaling (Danvers, MA, USA). Goat anti-rabbit IgG (Spicier reactivity Goat, Host/Isotype Rabbit/IgG; Cat #31460, RRID:AB_228341) and Alexa-Fluor 488 anti-mouse ThermoFisher (Waltham, MA, USA Cat #A11008, RRID:AB_143165 ). α-Bugarotoxin Alexa flour 594 was from ThermoFisher, Waltham, MA, USA Cat:# B12423.
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2

Mitochondrial Dynamics in Adipocyte Metabolism

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The following reagents were used: oligomycin, FCCP, rotenone, antimycin A, ADP, GDP, isoproterenol, CL 316,243 (Tocris Bioscience), isobutylmethylxanthine, dexamethasone, insulin, rosiglitazone, T3, recombinant mouse IL10 (Calbiochem, Cat# 407700), RNeasy (Qiagen), Lipofectamine 3000 (Life Technologies). DNA vectors: pDsRed2-Mito Vector (Clonetech). Antibodies as follows: anti-UCP-1 (Abcam, ab10983), anti- Phospho-(Ser/Thr) PKA Substrate (Cell Signaling #9621), anti-OPA1 (Abcam, ab42364), anti-mitofusin-2 (Abcam, ab 50843), anti-alpha-tubulin (Abcam, ab4074), anti- mtTFA ((A-17): sc-23588), anti-IL10 (Santa Cruz, sc-8438) and anti-OXPHOS cocktail (Abcam, ab110413).
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3

Apoptosis and Autophagy Regulation

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Cell Counting Kit-8 (CCK-8) was from Dojindo (Kumamoto, Kyushu Island, Japan). The Annexin V-FITC Apoptosis Detection Kit, Cell Cycle Detection Kit (R.T.U), and Caspase-9 Colorimetric Assay Kit were purchased from KeyGen Biotech (Nanjing, China). Dimethyl sulfoxide (DMSO), Hoechst 33258, 3-MA, and CQ diphosphate salt were from Sigma-Aldrich (St. Louis, MO, USA). The cell lysis buffer for Western blot and IP, Prestained Dual Color Protein Molecular Weight Marker, and BeyoECL Plus were from Beyotime (Shanghai, China). The anti-cyclin D1 (ab134175, 1:4000 dissolution), anti-Bcl-2 (ab182858, 1:4000 dissolution), anti-Bax (ab32503, 1:5000 dissolution), anti-cytochrome (ab133504, 1:5000 dissolution), anti-LC3B (ab192890, 1:2000 dissolution), anti-DRP1 (ab184247, 1:1000 dissolution), anti-mitofusin 2 (ab124773, 1:5000 dissolution), anti-TTC11 (ab71498, 1:400 dissolution), and COX4I1 (ab16056, 1:1000 dissolution) were from Abcam Technology (London, England). Anti-Atg5 (#12994, 1:1000 dissolution), anti-p62 (#8025, 1:1000 dissolution), anti-caspase-9 (#9502, 1:1000 dissolution), anti-PARP (#9532, 1:1000 dissolution), and anti-rabbit IgG, HRP-linked antibody (#7074, 1:3000 dissolution) were from Cell Signaling Technology (Boston, MA, USA).
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4

Mitochondrial Isolation and Characterization

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Mitochondria from HEK293 cells were prepared according to previously established protocols [16 (link)]. Water-soluble digitonin (Sigma–Aldrich, St. Louis, MO, USA) was used for permeabilization. Following 5 μg/mL proteinase K treatment, 100 μM PMSF was added to stop the enzyme activity. Anti-mitofusin 2 (Abcam, Cambridge, MA, USA), anti-Smac (Cell Signaling Technology, Danvers, MA, USA), and anti-HSP60 (Enzo Life Sciences, Plymouth Meeting, PA, USA) primary antibodies were used as markers of the outer membrane, the mitochondrial intermembrane space, and matrix, respectively.
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5

Immunoblotting and Immunoprecipitation Analyses

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Immunoblotting and immunoprecipitation analyses were performed as described previously [16 (link)]. The following antibodies were used: anti-V5 (Invitrogen, Grand Island, NY, USA), anti-myc (Up-state Biotechnology, Lake Placid, New York, USA), anti-UCP3 (Abcam), anti-mitofusin2 (Abcam), anti-Hax-1 (BD Biosciences, Franklin Lakes, NJ, USA), anti-GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-β-actin (Calbiochem, San Diego, CA, USA), anti-Smac/Diablo, and anti-HSP60 antibodies.
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6

Antibody Immunoprecipitation and Immunoblotting

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Antibodies were obtained from the indicated suppliers (Appendix Fig S4): anti‐actin (Abcam), anti‐Bap31 (Abcam), anti‐calnexin (Abcam), anti‐DRP1 (Abcam), anti‐Fis1 (Merck Millipore), anti‐GRP75 (Abcam), anti‐IP3R (Abcam), anti‐LC3 (MBL, Nagoya, Aichi 460‐0008, Japan, Merck Millipore, Burlington, MA, USA), anti‐LRRK2 (Abcam), anti‐MARCH5 (Abcam), anti‐mitofusin 1 (Abcam), anti‐mitofusin 2 (Abcam), anti‐MULAN (United State Biological), anti‐Parkin (Abcam), anti‐PTPIP51 (Abcam), anti‐p62 (MBL), anti‐PERK (Abcam), anti‐VAPB (Abcam), anti‐VDAC1(Abcam), anti‐FLAG (Sigma‐Aldrich), anti‐HA (MBL), anti‐Myc (MBL), anti‐phosphoserine (Abcam), and anti‐V5 (Thermo Fisher). Transfected cells were incubated for 2 days, harvested, and then lysed in lysis buffer (50 mM Tris–HCl [pH 8.0], 150 mM NaCl, and 0.1% SDS) for immunoblotting or in TNE buffer (50 mM Tris–HCl, pH 7.4 150 mM NaCl, 5 mM EDTA, 1% NP‐40, 0.25% Na‐deoxycholate, and 1 mM NaF) for immunoprecipitation/immunoblotting. Immunoprecipitation/immunoblot analyses were performed using standard protocols. The specificity of anti‐phospho‐serine antibody to phosphorylated serine was confirmed by immunoblotting of E3 ubiquitin ligases extracted from transfected cells treated with or without phosphatase (Appendix Fig S5A).
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