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9 protocols using trace metal grade hno3

1

ICP-MS Analysis of Trace Metals

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FTS from six mice were used to prepare three replicates of samples by combining two FTS at a time. The samples were digested with 2 × volume of trace-metal-grade HNO3 (Fisher) at 70 °C for 16 h in sealed plastic falcon tubes. Following digestion, samples were cooled to room temperature and diluted to obtain a 5% final HNO3 concentration. Metal content was analyzed with ICP-MS. A series of five ICP-MS iron calibration standards were prepared with a custom-made TEXASAM-15REV3 stock (Inorganic ventures). The concentrated stock contained 1 mg/L of natural abundance Fe. The remaining standards were obtained by diluting the previous standard 10×.
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2

Mn2+ Atomic Absorption Standard Protocol

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A 1000 mg/L Mn2+ atomic absorption standard was purchased from Acros Organics and diluted to desired concentrations. House distilled water that was further purified with a D2798 Barnstead water purification system was used for all standard solutions. Polystyrene-block-poly(ethylene-ran-butylene)-block-polystyrene-sulfonate 5% solution and Nafion perflourinated resin solution (5 % in lower aliphatic alcohols) were purchased from Sigma Aldrich and diluted with isopropanol where appropriate. Glacial acetic acid (85 %, Pharmco Brookfield, CT) and sodium acetate (Fisher Scientific) were mixed in different proportions to yield different pHs of acetate buffer used for analyses. Trace metal grade HNO3 was purchased from Fisher Scientific.
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3

Wet Digestion for Lead Analysis

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In order to determine Pb concentration, the collected samples were decomposed by wet digestion method.
An amount of 2 gr from each muscle sample was added into the digestion flask containing nitric acid (1 N, Trace Metal grade HNO3; Fisher Scientific) and digestion was performed at 80 °C for 4 h. At the end of digestion, the supernatant was removed and its volume was measured to calculate the concentration of Pb (12 (link)).
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4

Quantifying Ag-NP Bioaccumulation in Zebrafish

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Zebrafish samples from vehicle, 0.03, 0.3, and 3 ppm Ag-NP exposure groups were analyzed at 3 and 5 dpf to quantify tissue concentrations of Ag. Samples were analyzed in triplicate with 22 to 26 larval zebrafish/sample obtained from 3 separate spawnings. Zebrafish samples, triplicate method blanks (200 µL 18.2 MΩ/cm water), and triplicate NIST1640a digestion quality control standards (200 µL NIST1640a Trace Elements in Natural Water - National Institute of Standards and Technology) were digested by adding 30 µL concentrated TraceMetal Grade HNO3 (Fisher Scientific) and 100 µL concentrated TraceMetal Grade HCl (Fisher Scientific) then heating in a hot block that was ramped up to 95 ºC over 30 min, followed by digestion at 95 ºC for 1 h. 550 µL 30% ULTREX II H2O2 (J.T. Baker) was added incrementally to room temperature samples with heating between additions. The following increments were used: 50 µL at 4 ºC for 15 min, 100 µL at 67 ºC for 10 min, 100 µL at 85 ºC for 45 min, 150 µL at 95 ºC for 25 min, and 150 µL at 95 ºC for 1 h. The samples were allowed to cool, then brought to a final volume of 1 mL with 18.2 MΩ-cm water prior to analysis by the Interdisciplinary Center for Plasma Mass Spectrometry at the University of California at Davis (ICPMS.UCDavis.edu) using an Agilent 8900 ICP-MS (Agilent Technologies).
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5

Isotopic Labeling for Cell Analysis

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Li salts, 6LiCl (95% 6Li) and 7LiCl (99% 7Li), as well as natural LiCl salt (with natural abundance - 6Li at 7.49% and 7Li at 92.51%) were purchased from Sigma-Aldrich. TMRE (T669), Calcium Green 5-N (C3737) and trace-metal grade HNO3 were purchased from Fisher Scientific. Percoll was purchased from Cedarlane. All other reagents were purchased from Sigma-Aldrich.
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6

Quantitative ICP-MS Analysis of Cu,Zn-SOD1 Proteins

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Ultrapure Type 2 water with a resistivity of 18.2 MΩ/cm, produced by a Merck Direct–Q UV water purification system (Merck KGaA, Darmstadt, Germany), was used for all applications. The trace metal grade HNO3 was from Fisher Scientific, and the multi-element calibration standard and the ICP-MS internal standard mix were from Agilent Technologies.
Inductively coupled plasma mass spectrometry (ICP-MS) on Agilent 7800 series instrument was used to measure the metal content in wt Cu,Zn-SOD1 and G93A mutant samples. Metal concentrations were determined by the external calibration method by using multi-element calibration standard solutions in the range of 0.50–50 ppb in 2% trace metal grade HNO3. The protein samples were diluted in 2% HNO3 to a final concentration of 0.1 μM and 0.3 μM. The measurements were performed in He mode. For the ICP-MS instrument control Agilent MassHunter 4.4 software version C.01.04 was used under the following conditions: RF power 1550 W, nebulizer gas flow 1.03 L/min, auxiliary gas flow 0.90 L/min, plasma gas flow 15 L/min, nebulizer type: MicroMist, isotopes monitored: Cu-63 and Zn-66. The obtained results were analyzed by the program Origin 9 Pro.
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7

Intracellular Metal Quantification by ICP-OES

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Metal composition was determined using an Agilent 5110 Vertical Dual View Inductively Coupled Plasma - Optical Emission Spectrometer (VDV ICP-OES) (Agilent, Inc.). Cells were resuspended in 5% HNO3 for manual lysis or in 17.5% HNO3 for lysis in a Multiwave Go microwave digester (Anton Paar) as described previously.79 (link) Intracellular metal concentrations were determined by comparison with a standard curve created with a 10 μg ml−1 multi-element standard (CMS-5; Inorganic Ventures) diluted with 5% HNO3 to generate dilutions ranging from 5.00 to 0.01 μg ml−1. To avoid contamination with metals, trace-metal grade HNO3 was used (Fisher Chemical). Nitric acid was used in the lysis of cells in order to improve the lysis process and to provide greater stability of the samples for analysis by ICP-OES, ensuring that the analytes remained in solution for longer periods of time, which is particularly important with the transition metals as they are prone to hydrolysis. Specific wavelengths analyzed were Mn: 257.61 nm, Fe: 259.94 nm, Zn: 202.548 nm, Cu: 324.754 nm. Results are based on the means and standard deviations from at least three replicates of independent cultures for each strain/growth condition.
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8

Quantifying Iron in Cellular Organelles

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Packed mitochondria, vacuoles,
and whole cells were diluted 2–4 fold with deionized water.
The resulting ca. 400 μL suspensions were transferred to screw-top
plastic tubes and heated at 95 °C overnight in 200 μL of
30% trace-metal grade HNO3 (Fisher Scientific). Fe concentrations
were measured by ICP-MS (Agilent 7700x) as described.26 (link) Reported Fe concentrations of mitochondria, vacuoles, and
whole cells were multiplied by dilution factors and adjusted using
previously reported packing efficiencies of 0.77 for mitochondria,
0.76 for vacuoles, and 0.70 for whole cells.13 (link),28 (link)
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9

NMR and ICP-OES Characterization Methods

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All NMR spectra were obtained on a Bruker DRX 500 or Bruker Avance 400 broad band FT NMR spectrometers. 11B chemical shifts were referenced to BF3•Et2O (15% in CDCl3, δ 0.0 ppm) unless otherwise stated. All ICP-OES data were obtained on an Agilent ICP-OES 5100 spectrometer. Samples were diluted in 4% HNO3 using trace metal grade HNO3 (Fisher) and LC-MS Grade water (Fisher). Standard solutions were prepared from commercially available 1000 ppm stock solutions of boron (Acros) and iron (Ricca Chemical). Standard addition using a 2 ppm yttrium stock solution was used for all samples. Plots and statistics (k, half-life, etc) for dynamic dialysis and biodistribution experiments were calculated using GraphPad Prism software.
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